Skip to main content

PRF

Research projects

Research project supervision

The programme supports independent scientific work through an experimentally oriented diploma thesis. The research project is worth 33 ECTS credits (out of 120 total) and its focus falls mainly in areas of interest of researchers associated under the Department of Molecular Biology and Genetics. However, research projects under supervision of external mentors are also possible. For more options, check research done at closely cooperating institutes of the Biology Center of the Czech Academy of Sciences (CAS) and the Centre of Algal Biotechnology of the Institute of Microbiology CAS.

Senior researchers affiliated with the Department

prof. Alexander W. Bruce, Ph.D.
is interested in molecular mechanisms that underpin mammalian preimplantation embryo development; specifically the derivation of the first three cell lineages (trophectoderm, primitive endoderm & epiblast) that arise by the time of embryo uterine implantation.
                                   LEARN MORE


prof. RNDr. Josef Komenda, CSc., DSc. 
uses a model cyanobacterium Synechocystis to study mechanisms and regulation of the assembly of membrane pigment-protein complexes and their quality control. He particularly focuses on the role of structural subunits and auxiliary protein factors in the process of Photosystem II assembly.


prof. RNDr. Julius Lukeš, CSc.
is interested in functional analysis of mitochondrial proteins of the kinetoplastid Trypanosoma brucei to establish their functions in RNA editing and regulation of stability of mitochondrial transcripts and respiration. He is also interested in the evolution and biodiversity of parasitic kinetoplastid flagellates.


prof. Ing. Miroslav Oborník, Ph.D.
is interested in photosynthetic organelles of unicellular photoautotrophic eukaryotes and complex plastids of apicomplexan parasites that evolved through secondary endosymbiogenesis. He is mainly involved in the search for nuclear-encoded plastid targeted proteins, their in silico localization and phylogeny.


prof. RNDr. Ivo Šauman, Ph.D.
his research revolves around the ways in which organisms synchronize their biorhythms with environmental oscillations. The long-term goal of his research is to learn more about the cellular and molecular mechanisms regulating circadian rhythms.


doc. Mgr. Tomáš Doležal, Ph.D.
is interested in metabolic regulation of energy distribution into different organs during Drosophila melanogaster  immune response. He analyzes tissue-specific gene expression, signaling and metabolites throughout the infection and tests the impacts of various genetic manipulations on systemic physiology.
                                     LEARN MORE


prof. Ing. Roman Sobotka, Ph.D.
studies various aspects of oxygenic photosynthesis in cyanobacteria. A long term interest is the mechanistic insight on the biogenesis and photoprotection of photosynthetic apparatus and the chlorophyll biosynthesis pathway. A favorite organism is the model cyanobacterium Synechocystis PCC 6803. The laboratory utilizes a broad spectrum of methods, from genetics and biochemistry, various Omics techniques, in silico calculations to structural methods.


doc. Mgr. Hassan Hashimi, Ph.D.
investigates the evolution of mitochondria, the oldest extant endosymbiont in eukaryotes. He is particularly interested in cristae, the morphological character of mitochondria that literally give the organelle the room to breathe. He works with protists with weird cristae and mitochondria: Trypanosoma brucei and ciliates.
                                  LEARN MORE


RNDr. Drahomíra Faktorová, Ph.D.
is interested mainly in diplonemids, unicellular marine flagellates that were recently found to be one of the most abundant and diverse marine protists. Using diplonemids as a model we investigate functions of the most abundant eukaryotic proteins through a variety of molecular biology techniques and assays.   


RNDr. Alena Krejčí, Ph.D.
focuses on both basic and applied research of honey bee resistance to diseases. She investigates how bee thermoregulation, nutrition and apiary management practice influence the development of viral infections and other diseases.
                                      LEARN MORE


RNDr. Petr Nguyen, Ph.D.
combines cytogenetic and genomic approaches to study the role of genome organization and its changes in evolution. He is interested in evolutionary drivers of sex chromosome turnover and a role of neo-sex chromosomes in speciation.


Mgr. Adam Bajgar, Ph.D.
investigates functional versatility of Drosophila macrophages in the context of diverse physiological processes such as regulation of metabolism during infections, metamorphosis and development. His team has recently established several tools for manipulation of macrophages in non-model insect species.
                                LEARN MORE


RNDr. Radmila Čapková Frydrychová, Ph.D.
is interested in cell senescence caused by shortening of nucleoprotein structures at chromosome ends, the telomeres. She investigates the role of telomerase, an enzyme that adds short repetitive DNA sequences to the chromosome ends, in the regulation of aging in social insects.


Mgr. Hana Sehadová, Ph.D.
is interested in insect neuroanatomy, histology, and microscopy. She studies how living organisms perceive oscillations in external environmental stimuli such as light and temperature that precisely synchronize their internal biological clocks on a daily basis.
                                     LEARN MORE


Mgr. David Doležel, Ph.D.
uses various model and non-model insects to explore important questions of chronobiology and insect physiology. He combines reverse genetics approaches (RNAi, genome editing), omic approaches (genomics, transcriptomics, peptidomics), in vitro techniques (tissue cultures, yeast two-hybrid assay), microsurgical interventions and behavioral experiments.


Mgr. Michaela Fencková, Ph.D.
focuses on genetic and molecular control of neural development and cognition in health and disease. Using Drosophila as a model, she studies genes that are important for cognitive function and investigates how a single genetic defect can result in dramatic and severe neurodevelopmental disorders, such as intellectual disability or autism.             LEARN MORE


Mgr. Martin Kolísko, Ph.D.
employs comparative genomics and transcriptomics to understand the evolution of parasitism. Specifically, he seeks to understand the evolutionary mechanisms of the transition from a free-living organism to a parasitic mode of life and, conversely, from a parasitic mode of life back to a free-living mode of life.


RNDr. Petr Kopáček, CSc.
focuses on molecular descriptions of proteins that are key for the successful blood-feeding of ticks (mainly Ixodes ricinus) and the red poultry mite (Dermanyssus gallinae), or play a role in the acquisition & transmission of tick-borne pathogens.


Ing. Petr Novák, Ph.D.
is interested in repetitive DNA sequences and their impact on genome organization and evolution and development of novel bioinformatics approaches for de novo identification and characterization of repetitive elements from genomic shotgun sequencing data obtained by next-generation technologies.


doc. RNDr. Alena Panicucci Zíková, Ph.D.
is interested in medically important parasitic African trypanosomes. She focuses particularly on signals and molecular mechanisms driving metabolic remodeling and ultrastructural changes of mitochondria associated with complex parasitic life cycles involving mammalian hosts and insect vectors. 

LEARN MORE


prof. RNDr. Michal Žurovec, CSc.
focuses on insect cell growth regulators. He particularly studies adenosine signalling and regulation of energetic homeostasis in insect cells. Besides that, he is interested in targeted mutagenesis and characterisation of silk proteins.


 Mgr. Iva Mozgová, Ph.D.
is interested in epigenetic mechanisms underlying plant responses to environmental conditions. Her research focuses on the histone-modifying Polycomb repressive complexes (PRCs), the evolutionarily conserved protein complexes, that control seed-to-seedling transition in flowering plants


RNDr. Zdeněk Paris, Ph.D.
investigates various aspects of RNA biology of the protozoan parasite Trypanosoma brucei and related flagellates with a long term goal of identifying unique mechanisms of their RNA metabolism. He is mainly interested in processes such as tRNA modifications, nuclear tRNA export and role of the only intron containing tRNA in trypanosomes.


Mgr. Lenka Gahurová, Ph.D.
uses various sequencing and imaging approaches to study evolutionary history and molecular (especially epigenetic) mechanisms of long-term female fertility at the levels of oocytes, ovarian niche, and successful embryonic development in short-lived and long-lived non-model rodents.

LEARN MORE


Mgr. Aleš Horák, Ph.D.
deals with various aspects of evolutionary biology of protists and characterization of diversity, ecological role and metabolic potential of those unicellular eukaryotes; that represent majority of Earth’s biodiversity but cannot be kept in permanent cultures, using the power of the next-generation sequencing and bioinformatics.


prof. RNDr. Marek Jindra, CSc.
is interested in the receptor of juvenile hormone (JH), which regulates multiple aspects of insect development, reproduction, and physiology. His goal is to harness the juvenile hormone receptor to study the molecular action of JH in insect biology and identify novel compounds for safe and selective pest control.


Ing. Martin Moos, Ph.D.
and his team are developing novel bioanalytical approaches and apply them into metabolite research of insects and other important living organims. Unique analytical platforms developed by the team cover the analysis of a comprehensive set of metabolites, from small molecules derived from organic and amino acids, amines, over nucleosides, nucleotides, lipids, steroids, sugars or their conjugates to peptide sequencing.

LEARN MORE


Mgr. Anzhelika Butenko, Ph.D.
studies evolution of gene repertoire in Euglenozoa, a group of unicellular eukaryotes that includes Trypanosoma and Leishmania pathogens. She investigates genetic changes that underlie lifestyle switches and the genes that define ecological success of these organisms. using omics data and cutting-edge bioinformatics methods.

LEARN MORE


MSc. Galina Prokopchuk, Ph.D.
is interested in exploring the behavior of microorganisms, with a particular focus on marine diplonemids. Her research focuses on understanding different aspects such as ecology, ultrastructure, movement, predator-prey dynamics and molecular biology of various marine protists. She also investigates the roles of different protist proteins, particularly those whose functions remain unknown.

LEARN MORE


RNDr. Martin Volf, Ph.D.
is interested in the evolution of plant-herbivore interactions, particularly from the perspective of plant chemical defences. One of his main topics is exploring how different environmental pressures contribute towards the astonishing diversity of specialized metabolites among plant species.
                                         LEARN MORE


RNDr. Pável Matos-Maraví, Ph.D.
is interested in phylogenomics and population genomics of tropical insects (mainly butterflies). His aim is to understand the evolutionary drivers of speciation and biogeographical assemblages. His research team uses ecological and species traits datasets, which are coupled with whole-genome resequencing data and bioinformatics.



  • Alexander W. Bruce

    Laboratory of Early Mammalian Developmental Biology (LEMDB)

    Read more

  • Tomáš Doležal

    Laboratory of Integrative Biology in Drosophila

    Read more

  • Alena Krejčí

    Laboratory of Bee Biology

    Read more

  • Lenka Gahurová

    Mammalian Developmental Epigenetics and Bioinformatics

    Read more

  • Adam Bajgar

    Insect Immunometabolism

    Read more

  • Anzhelika Butenko

    Molecular Biology of Protist

    Read more

  • Galina Prokopchuk

    Molecular Biology of Protists

    Read more

  • Hana Sehadová

    Chronobiology, Neuroanatomy, Histology and microscopy

    Read more

  • Martin Volf

    Evolutionary Ecology

    Read more

  • Alena Panicucci Zíková

    Functional Biology of Protists

    Read more

  • Martin Moos

    Analytical Biochemistry and Metabolomics

    Read more

Read more …Research projects

  • Hits: 7955

Tuition fees

Tuition fees

There are no tuition fees**, only application
fee 700 CZK *** (approx. 30 EUR)

 

 

** Studies in foreign language are normally subject to tuition fees of 3000 EUR, however these do not apply to the Functional Genetics and Bioinformatics due to its funding through National Recovery Plan for Higher Education.
*** The application fee of CZK 700 can be paid by credit card through the JCU payment gateway or by bank transfer to account number 104725778/0300; variable symbol - 6020106, specific symbol - electronic application number generated by the electronic application system. 

Read more …Tuition fees

  • Hits: 7922

How to apply

How to apply

e-application

Part of the e-application is:

  • Curriculum vitae
  • Motivation letter - introduce yourself; explain your motivation and interest in the study programme, and your previous research experience.

  • A proof of English language proficiency * - certificates at CEFR B2 level and higher or an official computer-based TOEFL test score of 180 or higher, or a paper-based TOEFL test score of 500 or higher. The proof is not needed if you passed the final Bachelor's exam in English at the Faculty of Science of the University of South Bohemia with a grade better than or equal to "very good minus" or if you come from a country where English is the main language, that is Australia, anglophone Canada, Ireland, New Zealand, United Kingdom, United States of America, South Africa.

  • A certified copy of the Bachelor’s degree * needs to be submitted by 13 June 2024. 

     * applicants may request documents to be submitted at a later date by emailing the Department of Student Affairs (This email address is being protected from spambots. You need JavaScript enabled to view it.).

 

Please also check the General Information for prospective students, for additional information please contact Department of Student Affairs.

Certification of Bachelor's degree

You need to submit a certified hardcopy of your Bachelor's diploma that will be recognized by our Vice-dean for Bachelor and Master Studies. The types of diplomas/certificates and legal requirements differ widely between countries. It is therefore recommended to send the Department of Student Affairs (This email address is being protected from spambots. You need JavaScript enabled to view it.) a scan of your documents for pre-checking. The Department will inform you about any further requirements. There are various levels of document authentication and translation to Czech or English may be required in some cases.

International administration - visa

Depending on your nationality and status, you might have to apply for a visa or residence permit to enter and study in the Czech Republic. You should start your visa application as soon as possible as the whole procedure can take several months. Information about visas are available on our website at https://www.jcu.cz/study-at-usb/practical-info/immigration-visa-information

Contact the Department of Student Affairs (This email address is being protected from spambots. You need JavaScript enabled to view it.) for assistence.

Read more …How to apply

  • Hits: 8591

Study plan

Study plan

Core courses common to all specializations provide theoretical knowledge and practical skills in the field of modern omics technologies, in the analysis and interpretation of the resulting large data sets and in genome editing.

Core courses - 1st Winter semester

Graduates will further deepen their knowledge and skills in the context of one of the four offered specializations:

Core courses

Core courses are common to all specializations provide theoretical knowledge and practical skills in the field of modern omics technologies, in the analysis and interpretation of the resulting large data sets and in genome editing.
Practical Computing for Biologists KMB/925
The course presents the basic computing tools needed to build automated and reproducible pipelines for biological data analysis, visualization and publication.
Bioinformatics for Biologists KMB/615E
The aim of this course is to introduce students with specialization in biology to the new field of bioinformatics. Students will learn about basic algorithms and tools for analysis of data in biology, how to use databases and bioinformatics software.
Introduction to Omics & Biotechnology KMB/921
The aim of the course is to introduce students to OMICs approaches and biotechnologies in both basic and applied biological and biomedical research and related technologies.
Practicals in Omics & Biotechnology KMB/933
These are 5 block practicals in the last 3 weeks of the semester covering the most commonly used OMICs approaches and gene editing. Three of the multi-day practicals are truly hands-on, two are guided visits to service facilities with the opportunity to try out data analysis.
Seminars in Omics & Biotechnology KMB/926
The individual seminars should serve as highlights for individual specializations and as demonstrations of the potential applications of selected technologies, highlighting the latest hot topics in both basic and applied research.
Essays in Omics & Biotechnology KMB/918
The student will choose a current topic on the application of OMICs technology, biotechnology or genome editing and will elaborate this topic (1) into an essay, which (2) will be presented in a seminar to other students where the topic will be discussed.
The New Statistics for Experimental Biologists KMB/929
The fundamentals of statistical reasoning and applications of data analysis in the realm of biological sciences, including some relatively new methods in statistics (e.g., the use of information criteria and multi-model inference) are the focus of this introductory statistical course.
Bioethics KMB/913
In this course bioethics and its fundamental principles will be introduced. This includes some concepts and methods relevant to all human disciplines, ranging from logic, epistemology, and ontology to general ethics.
Master's English Examination – TOEFL OJZ/930
Testing EAP competencies and communication skills of students on level C1 according to CEFR.
Masters Thesis Assignment KMB/885
The title of the topic of the planned Master Thesis, aims of the research and fundamental sources of information.
Master thesis, Practical part KMB/881
Theoretical preparation for Master´s diploma thesis as well as practical work on the topic of the thesis.
Genetics - Colloquia KMB/180
The objective of this seminar is to provide students with sufficient space for training in giving short lectures concerning either their own results or more general science topics. The experience of students gained in these seminars will be useful in lecturing in symposia and conferences. In parallel, students will have the opportunity to hear lectures given by experienced lecturers.
Cell Structure and Function KMB/914
This course provides students of the program the proper foundation for the basic unit of life, the cell, which decodes the information inherent in DNA.

Read more …Study plan

  • Hits: 9174

Stay in touch
social media

© 2024 University of South Bohemia
Cookies

1

0