Department of Physics
Publications
- B. S. Babu, P. Kayshap, S. C. Tripathi, P. Jelínek, B.N. Dwivedi, Spectroscopic Diagnostic of the Footpoints of the Cool Loops, MNRAS, 528, 2474, 2024. https://doi.org/10.1093/mnras/stae166
- R. Akbarzadeh, M. Předota, ReaxFF Molecular Dynamics of Graphene Oxide/NaCl Aqueous Solution Interfaces, Phys. Chem. Chem. Phys. 26, 2603-2612 (2024). https://doi.org/10.1039/D3CP04735K
- E. Rezlerová, F. Moučka, M. Předota, and M. Lísal, Structure and self-diffusivity of mixed-cation electrolytes between neutral and charged graphene sheets, J. Chem. Phys., accepted (2024).
- Milan Novak, Petr Doležal, Ondřej Budík, Ladislav Ptáček, Jakub Geyer, Markéta Davídková, Miloš Prokýšek, Intelligent inspection probe for monitoring bark beetle activities using embedded IoT real-time object detection, Engineering Science and Technology, an International Journal, Volume 51, 2024, 101637, ISSN 2215-0986, https://doi.org/10.1016/j.jestch.2024.101637
- Özcan, E., Šímová, I., Bína, D., Litvín, R., Polívka, T., Ultrafast spectroscopy of the hydrophilic carotenoid crocin at various pH. Phys. Chem. Chem. Phys. 26, 10225-10233, 2024. https://doi.org/10.1039/D4CP00665H
- Sauer, P. V., Cupellini, L., Sutter, M., Bondanza, M., Dominguez-Martin, M. A., Kirst, H., Bína, D., Fujiet Koh, A., Kotecha, A., Greber, B. J., Nogales, E., Polívka, T., Mennucci, B., Kerfeld, C. A., Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes. Sci. Adv. 10, eadk7535, 2024. https://doi.org/10.1126/sciadv.adk7535
- Chrupková, P., van Stokkum, I., Budisa, N., Tseng, H-W., Moldenhauer, M., Friedrich, T., Cherepanov, D.A., Polívka, T., Maksimov, E.G., Kloz, M. Raman vibration signatures of excited states of echinenone in the orange carotenoid protein (OCP) and implications for its photoactivation mechganism. J. Mol. Biol. 436, 168625, 2024. https://doi.org/10.1016/j.jmb.2024.168625
- Šímová, I., Chrupková, P., Gardiner, A.T., Koblížek, M., Kloz, M., Polívka, T. Femtosecond stimulated Raman spectroscopy of linear carotenoids. J. Phys. Chem. Lett. 15, 7466–7472, 2024. https://doi.org/10.1021/acs.jpclett.4c01272
- Özcan, E., Keşan, G., Chábera, P., Litvín, R., Polívka, T. Synthesis and spectroscopic properties of carotenoid bis-phenylhydrazone astaxanthin: Extending conjugation to a C=N group. New J. Chem. 48, 12919-12928, 2024. https://doi.org/10.1039/D4NJ02282C
- S. K. Mishra, K. Sangal, P. Kayshap, P. Jelínek, A. K. Srivastava, S. P. Rajaguru, Origin of Quasi-Periodic Pulsation at the Base of Kink Unstable Jet, The Astrophysical Journal, 945, 2, 2023. https://doi.org/10.3847/1538-4357/acb058
- O. V. Kontkanen, D. Biriukov, Z. Futera: Applicability of Perturbed Matrix Method for Charge Transfer Studies at Bio/Metallic Interfaces: A Case of Azurin. Phys. Chem. Chem. Phys. 25, 12479–12489 (2023) https://doi.org/10.1039/d3cp00197
- Z. Futera, X. Wu, J. Blumberger: Tunneling-to-Hopping Transition in Multiheme Cytochrome Bioelectronic Junctions. J. Phys. Chem. Lett. 14, 445–452 (2023) https://doi.org/10.1021/acs.jpclett.2c03361
- Özcan, E., Kuznetsova, V., Keşan, G., Fuciman, M., Litvín, R., Polívka, T.: Ultrafast excited states dynamics of metal ion complexes of the carotenoid astaxanthin. J. Photochem. Photobiol. A. 441, 114737, 2023. https://doi.org/10.1016/j.jphotochem.2023.114737
- Kuznetsova, V., Fuciman, M., Polívka, T.: Relaxation dynamics of high-energy excited states of carotenoids studied by UV excitation and pump-repump-probe transient absorption spectroscopy. Phys. Chem. Chem. Phys. 25, 22336-22344, 2023. https://doi.org/10.1039/D3CP02485G
- Keşan, G., Özcan, E., Chábera, P., Polívka, T., Fuciman, M.: Time-resolved spectro-electrochemical dynamics of carotenoid 8’-apo-β-carotenal. ChemPlusChem, e202300404, 2023. https://doi.org/10.1002/cplu.202300404
- E. Pitula, M. Janik, P. Sezemsky, K. P. Szymanska, M. Olszewski, V. Stranak, M. Koba, M. Smietana: Smartphone-based dynamic measurements of electro-optically modulated lossy-mode resonance and its biosensing applications, Measurement 206, (2023). https://doi.org/10.1016/j.measurement.2022.112349
- P. Sezemsky, M. Koba, P. Curda, R. Bogdanowicz, V. Stranak, M. Smietana: Electro-optical transducer based on indium-tin-oxide-coated optical fiber for analysis of ionized media, Measurement 212, (2023). https://doi.org/10.1016/j.measurement.2023.112695
- I. Dominguez, J.M. Corres, I. Del Villar, J.D. Mozo, R. Simerova, P. Sezemsky, V. Stranak, M. Śmietana, I. R. Matias, Electrochemical lossy mode resonance for detection of manganese ions, Sensors and Actuators B: Chemical 394, (2023). http://dx.doi.org/10.1016/j.snb.2023.134446
- P. Curda, D. Kaftan, T. Kozak, S. Kumar, P. Sezemsky, V. Stranak, High-defined and size-selective deposition of nanoparticles by their manipulation in an electrostatic field, Appl. Surf. Sci. 640, (2023). https://doi.org/10.1016/j.apsusc.2023.158307
- P. Curda, R. Hippler, M. Cada, O. Kylian, V. Stranak, Z. Hubicka, The role of dimers in the efficient growth of nanoparticles, Surf. Coat. Technol. 473, (2023). https://doi.org/10.1016/j.surfcoat.2023.130045
- D-S. Kouao, J. Hanus, O. Kylian, R. Simerova, P. Sezemsky, V. Stranak, K. Grochowska, K. Siuzdak, Photoelectrochemical and Electrochemical Activity of Anodic Semitransparent Aligned and Spaced Titania Nanotubes Formed out of Titanium−Silver Alloys, ACS Appl. Nano Mat. XX, (XXX), http://dx.doi.org/10.1021/acsanm
- B. Chu, D. Biriukov, M. Bischoff, M. Předota, S. Roke and A. Marchioro, Evolution of the Electrical Double Layer with Electrolyte Concentration Probed by Second Harmonic Scattering, Faraday Discuss. 246, 407-425 (2023). https://doi.org/10.1039/D3FD00036B
- E. Rezlerová, F. Moučka, M. Předota, and M. Lísal, Structure and self-diffusivity of alkali-halide electrolytes in neutral and charged graphene nanochannels, Phys. Chem. Chem. Phys. 25, 21579-21594 (2023). https://doi.org/10.1039/D3CP03027J
- S. Kumar, J. Kratochvil, Y. Al-Muhkhrabi, E. Kratochvilova, D. Kahoun, D. Kaftan, J. Hanus, J. Sterba, V. Stranak, Surface anchored Ag nanoparticles prepared by gas aggregation source: Antibacterial effect and the role of surface free energy, Surfaces and Interfaces 30, (2022), 101818
- S. Kumar, J. Kratochvíl, Y. Al-Muhkhrabi, O. Kylián, D. Nikitin, V. Straňák, Ag nanoparticles immobilized on C:H:N:O plasma polymer film by elevated temperature for LSPR sensing, Plasma Processes Polym. 2022, e2100144
- D. Burnat, P. Sezemsky, K. Lechowicz, M. Koba, M. Janczuk-Richter, M. Janik, V. Stranak, J. Niedziolka-Jonson, R. Bogdanowicz, M. Smietana, Functional fluorine-doped tin oxide coating for opto-electrochemical label-free biosensors, Sensors and Actuators B – Chemical 367, (2022), 132145
- E. Pituła, M. Janik, P. Sezemsky, K. P. Szymańska, M. Olszewski, V. Stranak, M. Koba, M. Śmietana, Smartphone-Based Dynamic Analysis of Electro-Optically Modulated Lossy-Mode Resonance for Label-Free Biosensing, SSRN Electronic Journal, (2022), http://dx.doi.org/10.2139/ssrn.4129006
- V. V. Smirnova, Y. Tsap., P. Jelínek, M. Karlický, Transverse oscillations of quiet solar filament observed at the 304 Å EUV passband, Advances in Space Research, 70, 3257, 2022. https://doi.org/10.1016/j.asr.2022.08.064
- A. Hankova, A. Kuzminova, J. Hanus, P. Sezemsky, R. Simerova, V. Stranak, K. Grochowska, D.-S. Kouao, K. Siuzdak, M. Prochazka, T. Kosutova, O. Kylian, TiO2/Ag nanostructured coatings as recyclable platforms for surface-enhanced Raman scattering detection, Surfaces and Interfaces 35, (2022), http://dx.doi.org/10.1016/j.surfin.2022.102441
- M. Smietana, B. Janasek, K. Lechowicz, P. Sezemsky, M. Koba, D. Burnat, M. Kieliszczyk, V. Stranak, P. Szczepanski, Electro-optically modulated lossy-mode-resonance, Nanophotonics 11(3), (2022), 593
- D. Biriukov, H.-W. Wang, N. Rampal, C. Tempra, P. Kula, J. C. Neuefeind, A. G. Stack, and M. Předota: “The “Good,” the “bad,” and the “hidden” in neutron scattering and molecular dynamics of ionic aqueous solutions”, J. Chem. Phys. 156, 194505 (2022). https://doi.org/10.1063/5.0093643
- Qian, P., Gardiner, A.T., Šímová, I., Naydenova, K., Croll, T., Jackson, P.J., Nupur, Kloz, M., Čubáková, P., Kuzma, M., Zeng, Y., Castro-Hartmann, P., van Knippenberg, B., Goldie, K.N., Kaftan, D., Hrouzek, P., Hájek, J., Agirre, J., Siebert, C.A., Bína, D., Sader, K., Stahlberg, H., Sobotka, R., Russo, C.J., Polívka, T., Hunter, C.N., Koblížek, M. 2.4 Å structure of the double ring Gemmatimonas phototrophica photosystem. Sci. Adv. 8, eabk3139, 2022. https://doi.org/10.1126/sciadv.abk3139
- Khan, T., Kuznetsova, V., Dominguez-Martin, M.A., Kerfeld, C.A., Polívka, T. UV excitation of carotenoid binding proteins OCP and HCP: Excited-state dynamics and product formation. ChemPhotoChem, 6, e202100194, 2022. https://doi.org/10.1002/cptc.202100194
- Gray, C., Wei, T., Polívka, T., Daskalakis, V., Duffy, C.D.P. Trivial excitation energy transfer to carotenoids is an unlikely mechanism for non-photochemical quenching in LHCII. Front. Plant Sci., 12, 797373, 2022. https://doi.org/10.3389/fpls.2021.797373
- Šebelík, V., Duffy, C.D.P., Keil, E., Polívka, T., Hauer, J. Understanding ultrafast energy relaxation in carotenoids. J. Phys. Chem. B, 126, 3985-3994, 2022. https://doi.org/10.1021/acs.jpcb.2c00996
- Dominguez-Martin, M.A., Sauer, P.V., Kirst, H., Sutter, M., Bína, D., Greber, B.J., Nogales, E., Polívka, T., Kerfeld, C.A. Structures of a phycobilisome in light-harvesting and photoprotected states. Nature, 609, 835-845, 2022. https://doi.org/10.1038/s41586-022-05156-4
- Šímová, I., Kuznetsova, V., Gardiner, A.T., Šebelík, V., Koblížek, M., Fuciman, M., Polívka, T. Carotenoid as a sensor of excess energy dissipation in the LH2 complex from Rhodoblastus acidophilus. Photosynth. Res. 154, 75-87, 2022. https://doi.org/10.1007/s11120-022-00952-5
- Zigmantas, D., Polívka, T., Persson, P., Sundström, V. Ultrafast laser spectroscopy uncovers mechanisms of light energy conversion in photosynthesis and sustainable energy materials. Chem. Phys. Rev. In press.
- P. Jelínek, S. Belov, M. Karlický, Numerical simulations of oscillations in solar corona excited by vortex shedding, The Astrophysical Journal, 941, 124, 2022. https://doi.org/10.3847/1538-4357/aca40d
- Y. Alvarez-Galvan, B. Minofar, Z. Futera, M. Francoeur, C. Jean-Marius, N. Brehm, Ch. Yacou, U. J. Jauregui-Haza, S. Gaspard: Adsorption of Hexavalent Chromium Using Activated Carbon Produced from Sargassum ssp.: Comparison between Lab Experiments and Molecular Dynamics Simulations. Molecules 27, 6040 (2022) https://doi.org/10.3390/molecules27186040
- J. P. Hill, P. A. Karr, R. A. Z. Uy, N. K. Subbaiyan , Z. Futera, K. Ariga, S. Ishihara, J. Labuta, F. D’Souza: Analyte Interactions with Oxoporphyrinogen Derivatives: Computational Aspects. Curr. Org. Chem. 26, 580–595 (2022) https://doi.org/10.2174/1385272826666220208101325
- O. V. Kontkanen, D. Biriukov, Z. Futera: Reorganization Free Energy of Copper Proteins in Solution, in Vacuum, and on Metal Surfaces. J. Chem. Phys. 156, 175101 (2022) https://doi.org/10.1063/5.0085141
- Y. Tateyama, Z. Futera, Y. Ootani, S. Iizuka, L. T. Anh: ”Computational Aspects of Surface and Interface of BDD Electrode” in: Einaga Y. (eds) Diamond Electrodes. Springer, Singapore (2022) https://doi.org/10.1007/978-981-16-7834-9_5
- H. Wu, M. R. Ghaani, Z. Futera, N. J. English: Effects of Externally Applied Electric Fields on the Manipulation of Solvated-Chignolin Folding: Static- versus Alternating-Field Dichotomy at Play. J. Phys. Chem. B 126, 376-386 (2022) https://doi.org/10.1021/acs.jpcb.1c06857
- Z. Futera, N. J. English: Dielectric Properties of Ice VII under the Influence of Time-Alternating External Electric Fields. Phys. Chem. Chem. Phys. 24, 56-62 (2022) https://doi.org/10.1039/d1cp04165g
- D. T. Payne, J. Labuta, Z. Futera, V. Brezina, L. Hanykova, M. K. Chahal, J. P. Hill: Molecular Rotor Based on an Oxidized Resorcinarene. Org. Chem. Front. 9, 39 (2022) https://doi.org/10.1039/d1qo01479j
- P. Kayshap, D. Tripathi, P. Jelínek, Dynamics of Sunspot Shock Waves in the Chromosphere and Transition Region, The Astrophysical Journal, 906, 121, 2021. https://doi.org/10.3847/1538-4357/abcc6f
- Khan, T., Litvín, R., Šebelík, V., Polívka, T. Excited state evolution of keto-carotenoids after excess energy excitation in the UV region. ChemPhysChem. 22, 471-480, 2021. https://doi.org/10.1002/cphc.202000982
- Šebelík, V., Kuznetsova, V., Lokstein, H., Polívka, T. Transient absorption of chlorophylls and carotenoids after two-photon excitation of LHCII. J. Phys. Chem. Lett. 12, 3176-3181, 2021. https://doi.org/10.1021/acs.jpclett.1c00122
- Biriukov, D., Futera, Z. Adsorption of Amino Acids at the Gold/Aqueous Interface: Effect of an External Electric Field. J. Phys. Chem. C 125, 7856-7867, 2021. https://doi.org/10.1021/acs.jpcc.0c11248
- Futera, Z. Amino-acid interactions with the Au(111) surface: adsorption, band alignment, and interfacial electronic coupling. Phys. Chem. Chem. Phys. 23, 10257-10266, 2021. https://doi.org/10.1039/d1cp00218j
- Mrkyvkova, N., Cernescu, A., Futera, Z., Nebojsa, A., Dubroka, A., Sojkova, M., Hulman, M., Majkova, E., Jergel, M., Siffalovic, P., Schreiber, F. Nanoimaging of Orientational Defects in Semiconducting Organic Films. J. Phys. Chem. C 125, 9229-9235, 2021. https://doi.org/10.1021/acs.jpcc.1c00059
- Kartha, K. K., Takai, A., Futera, Z., Labuta, J., Takeuchi, M. Dynamics of Meso-Chiral Interconversion in a Butterfly-Shape Overcrowded Alkene Rotor Tunable by Solvent Properties. Angew. Chem. Int. Ed. 60, 2-8, 2021. https://doi.org/10.1002/anie.202102719
- Futera, Z., English, N. J.: Water Breakup at Fe2O3 - Hematite/Water Interfaces: Influence of External Electric Fields from Nonequilibrium Ab Initio Molecular Dynamics. J. Phys. Chem. Lett. 12, 6818-6826, 2021. https://doi.org/10.1021/acs.jpclett.1c01479
- N. Rampal, H.-W. Wang, D. Biriukov, A. B. Brady, J. C. Neuefeind, M. Předota, A.G. Stack: Local molecular environment drives speciation and reactivity of ion complexes in concentrated salt solution. J. Mol. Liq. 340, 116898, 2021. https://doi.org/10.1016/j.molliq.2021.116898
- O. Kroutil, V. D. Nguyen, J. Volánek, A. Kučera, M. Předota, V. Vranová: Clinoptilolite/electrolyte Interface Probed by a Classical Molecular Dynamics Simulations and Batch Adsorption experiments, Microporous and Mesoporous Materials 328, 111406, 2021. https://doi.org/10.1016/j.micromeso.2021.111406
- A. K. Srivastava, S. K. Mishra, P. Jelínek, The Prominence Driven Forced Reconnection in the Solar Corona and Associated Plasma Dynamics, The Astrophysical Journal, 920, 18, 2021. https://doi.org/10.3847/1538-4357/ac1519
- M. Bischoff, D. Biriukov, M. Předota, and A. Marchioro: “Second Harmonic Scattering Reveals Ion-Specific Effects at the SiO2 and TiO2 Nanoparticle/Aqueous Interface”, J. Phys. Chem. C125, 25261−25274, 2021. https://doi.org/10.1021/acs.jpcc.1c07191
- I. Yaroshevich, E. Maksimov, N. Sluchanko, D. Zlenko, A. Stepanov, E. Slutskaya, Y. Slonimskiy, V. Botnarevskii, A. Remeeva, I. Gushchin, K. Kovalev, V. Gordeliy, I. Shelaev, F. Gostev, D. Khakhulin, V. Poddubnyy, T. Gostev, D. Cherepanov, T. Polívka, M. Kloz, T. Friedrich, V. Paschenko, V. Nadtochenko, A. Rubin, M. Kirpichnikov, Role of hydrogen bond alternation and charge transfer states in photoactivation of the Orange Carotenoid Protein. Communications Biology, 539, 2021. https://doi.org/10.1038/s42003-021-02022-3
- T. Khan, V. Kuznetsova, M.A. Dominguez-Martin, C.A. Kerfeld, T. Polívka, UV excitation of carotenoid binding proteins OCP and HCP: Excited-state dynamics and product formation. ChemPhotoChem, 5, 2021. https://doi.org/10.1002/cptc.202100194
- P. Skotnicová, H. Staleva-Musto, V. Kuznetsova, D. Bína, M.M. Konert, S. Lu, T. Polívka, R. Sobotka, Plant LHC-like proteins show robust folding and static non-photochemical quenching. Nature Communications, 12, 6890, 2021. https://doi.org/10.1038/s41467-021-27155-1
- J. Kratochvil, V. Prysiazhnyi, F. Dycka, O. Kylian, P. Kus, P. Sezemsky, J. Sterba, V. Stranak, Gas aggregated Ag nanoparticles as the inorganic matrix for laser desorption/ionization mass spectrometry, Appl. Surf. Sci. 541, (2021), 148469. https://doi.org/10.1016/j.apsusc.2020.148469
- A. Dettlaff, M. Brodowski, M. Kowalski, V. Stranak, V. Prysiazhnyi, E. Klugmann-Radziemska, J. Ryl, R. Bogdanowicz, Highly Oriented Zirconium Nitride and Oxynitride Coatings Deposited via High-Power Impulse Magnetron Sputtering: Crystal-Facet-Driven Corrosion Behavior in Domestic Wastewater, Advanced Engineering Materials (2021), 2001349. https://doi.org/10.1002/adem.202001349
- P. Sezemsky, D. Burnat, J. Kratochvil, H. Wulff, A. Kruth, K. Lechowicz, M. Janik, R. Bogdanowicz, M. Cada, Z. Hubicka, P. Niedziałkowski, W. Białobrzeska, V. Stranak, M. Smietana, Tailoring properties of indium tin oxide thin films for their work in both electrochemical and optical label-free sensing systems, Sensors and Actuators: B. Chemical 343, (2021), 130173. https://doi.org/10.1016/j.snb.2021.130173
- V. Prysiazhyi, J. Kratochvil, D. Kaftan, R. Ctvrtlik, V. Stranak, Growth of hard nanostructured ZrN surface induced by copper nanoparticles, Appl. Surf. Sci 562, (2021), 150230. https://www.doi.org/10.1016/j.apsusc.2021.150230
- A. Azinfar, S. Neuber, M. Vancova, J. Sterba, V. Stranak, C.A. Helm, Influence of deposition Steps and Drying in a Vacuum, Langmuir XXX, (2021). https://www.doi.org/10.1021/acs.langmuir.1c01409
- S. Kumar, J. Kratochvíl, Y. Al-Muhkhrabi, O. Kylián, D. Nikitin, V. Stranak, Ag nanoparticles immobilized on C:H:N:O plasma polymer film by elevated temperature for LSPR sensing, Plasma Processes Polym. 2021, e2100144. https://www.doi.org/10.1002/ppap.202100144
- Ziogos, O. G., Kubas, A., Futera, Z., Xie, W., Elstner, M., Blumberger, J.: HAB79: A New Molecular Dataset for Benchmarking DFT and DFTB Electronic Couplings Against High-Level Ab Initio Calculations. J. Chem. Phys. 155, 234115, 2021. https://doi.org/10.1063/5.0076010
- M. Śmietana, B. Janaszek, K. Lechowicz, P. Sezemsky, M. Koba, D. Burnat, M. Kieliszczyk, V. Stranak, P. Szczepański, Electro-optically modulated lossy-mode resonance, Nanophotonics, 2021. https://doi.org/10.1515/nanoph-2021-0687
- Kuznetsova, V., Dominguez-Martin, M.A., Bao, H., Gupta, S., Sutter, M., Kloz, M., Rebarz, M., Přeček, M., Chen, Y., Petzold, C.J., Ralston, C.Y., Kerfeld, C.A., Polívka, T. Comparative ultrafast spectroscopy and structural analysis of OCP1 and OCP2 from Tolypothrix. BBA-Bioenergetics, 1861, 148120, 2020. https://doi.org/10.1016/j.bbabio.2019.148120
- P. Kayshap, A. K. Srivastava, S. K. Tiwari, P. Jelínek, M. Mathioudakis, Propagation of waves above a plage as observed by IRIS and SDO, Astronomy and Astrophysics 634, A63, 2020. https://doi.org/10.1051/0004-6361/201936070
- D. Biriukov, P. Fibich, M. Předota, Zeta Potential Determination from Molecular Simulations, J. Phys. Chem. C 124, 3159, 2020. https://doi.org/10.1021/acs.jpcc.9b11371
- Futera, Z., Jiang, X., Blumberger, J. Ergodicity breaking in thermal biological electron transfer? Cytochrome c revisited II. J. Phys. Chem. B 124, 3336, 2020. https://doi.org/10.1021/acs.jpcb.0c01414
- Staleva-Musto, H., Kuznetsova, V., Bína, D., Litvín, R., Polívka, T. Intramolecular charge transfer state of carotenoids siphonaxanthin and siphonein: Function of non-conjugated acyl-oxy group. Photosynth. Res. 144, 127-135, 2020. https://doi.org/10.1007/s11120-019-00694-x
- M. Rycewicz, L. Macewicz, J. Kratochvil, A. Stanisławska, M. Ficek, M. Sawczak, V. Stranak, M. Szkodo, R. Bogdanowicz, Physicochemical and Mechanical Performance of Freestanding Boron-Doped Diamond Nanosheets Coated with C:H:N:O Plasma Polymer, Materials, 13, (2020), 1861. https://doi.org/10.3390/ma13081861
- M. Bischoff, D. Biriukov, M. Předota, S. Roke, A. Marchioro, Surface Potential and Interfacial Water Order at the Amorphous TiO2 Nanoparticle/Aqueous Interface, J. Phys. Chem. C 124, 10961, 2020. https://doi.org/10.1021/acs.jpcc.0c01158
- P. Jelínek, M. Karlický, V. Smirnova, A. Solov'ev, Transverse oscillations of the double-structured solar filament, Astronomy and Astrophysics, 637, A42, 2020. https://doi.org/10.1051/0004-6361/201936836
- J. Kratochvíl, V. Stranak, J. Kousal, P. Kúš, O. Kylián, Theoretical and experimental analysis of defined 2D-graded two-metal nanoparticle-build surfaces, Applied Surface Science, 551, (2020), 145530. https://doi.org/10.1016/j.apsusc.2020.145530
- M. Vaidulych, P. Pleskunov, J. Kratochvíl, H. Mašková, P. Kočová, D. Nikitin, J. Hanuš, O. Kylián, J. Štěrba, H. Biederman, A. Choukourov, Convex vs concave surface nano-curvature of Ta2O5 thin films for tailoring the osteoblast adhesion, Surface and Coatings Technology, in press, 2020, 125805 https://doi.org/10.1016/j.surfcoat.2020.125805
- M. Předota, D. Biriukov, Electronic Continuum Correction without Scaled Charges, J. Mol. Liq. 314, 113571 , 2020. https://doi.org/10.1016/j.molliq.2020.113571
- O. Kroutil, S. Pezzotti, M.-P. Gaigeot, M. Předota, Phase-Sensitive Vibrational SFG Spectra from Simple Classical Force Fields Molecular Dynamics Simulations, J. Phys. Chem. C 124, 15253, 2020. https://doi.org/10.1021/acs.jpcc.0c03576
- Adamec, F., Farci, D., Bína, D., Litvín, R., Khan, T., Fuciman, M., Piano, D., Polívka, T. Photophysics of deinoxanthin, the keto-carotenoid bound to the main S-layer unit of Deinococcus radiodurans. Photobiol. Sci. 19, 495-503, 2020. https://doi.org/10.1039/d0pp00031k
- Futera, Z., Tse, J. S., English, N. J. Possibility of realizing superionic ice VII in external electric fields of planetary bodies. Sci. Adv. 6, eaaz2915, 2020. https://doi.org/10.1126/sciadv.aaz2915
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- M. Smietana, P. Niedziałkowski, W. Białobrzeska, D. Burnat, P. Sezemsky, M. Koba, V. Stranak, K. Siuzdak, T. Ossowski, R. Bogdanowicz, Study on Combined Optical and Electrochemical Analysis Using Indium-tin-oxide-coated Optical Fiber Sensor, Electroanalysis, 31, 1 –8 (2019) https://doi.org/10.1002/elan.201800638
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- V. Prysiazhnyi, F. Dycka, J. Kratochvil, V. Stranak, P. Ksirova, Z. Hubicka, Silver nanoparticles for solvent-free detection of small molecules and mass-to-charge calibration of laser desorption/ionization mass spectrometry, Journal of Vacuum Science & Technology B , 37, 012906, (2019) https://doi.org/10.1116/1.5050878
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- M. L. Machesky, M. K. Ridley, D. Biriukov, O. Kroutil, M. Předota: “Oxalic Acid Adsorption on Rutile: Experiments and Surface Complexation Modeling to 150 °C”, Langmuir 35, 7631-7640 (2019), https://doi.org/10.1021/acs.langmuir.8b03982
- Balevičius, V., Wei, T., Di Tommaso, D., Abramavicius, D., Hauer, J., Polívka, T., Duffy, C. The full dynamics of energy relaxation in large organic molecules: from photo-excitation to solvent heating. Chemical Science, 10, 4792-4804, 2019.
- P. Jelínek, M. Karlický, Pulse-beam heating of deep atmospheric layers, their oscillations and shocks modulating the flare reconnection, Astronomy and Astrophysics 625, A3, 2019. https://doi.org/10.1051/0004-6361/201935188
- V. Prysiazhnyi, J. Kratochvíl, O. Kylián, V. Stranak, Reactive sputtering deposition of plasma polymerized nylon films with embedded NHx groups, Surface & Coatings Technology, 363, 120-127 (2019) https://doi.org/10.1016/j.surfcoat.2019.02.046
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- R. Hippler, M. Čada, V. Stranak, Z. Hubička, Ion formation in an argon and argon-oxygen gas mixture of a magnetron sputtering discharge, J. Phys. Commun., 3, 055011 (2019) https://doi.org/10.1088/2399-6528/ab1e82
- M. Sobaszek, D. Burnat, P. Sezemsky, V. Stranak, R. Bogdanowicz, M. Koba, K. Siuzdak, M. Śmietana, Enhancing electrochemical properties of an ITO-coated lossy-mode resonance optical fiber sensor by electrodeposition of PEDOT:PSS, 9, 3069-3078 (2019) https://doi.org/10.1364/OME.9.003069
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- Janczuk-Richter, M., Piestrzynska, M., Burnat, D., Sezemsky, P., Stranak, V., Bock, W.J., Bogdanowicz, R., Niedziolka-Jonsson, J., Smietana, M., Optical investigations of electrochemical processes using a long-period fiber grating functionalized by indium tin oxide, Sensors and actuators B-chemical (2019), DOI: 10.1016/j.snb.2018.10.001
- A. K. Srivastava, S. K. Mishra, P. Jelínek, T. Samanta, H. Tian, V. Pant, P. Kayshap, D. Banerjee, J. G. Doyle, B. N. Dwivedi, On the Observations of Rapid Forced Reconnection in the Solar Corona, The Astrophysical Journal 887, 2, 2019. https://doi.org/10.3847/1538-4357/ab4a0c5
- A. Marchioro, M. Bischoff, C. Lütgebaucks, D. Biriukov, M. Předota and S. Roke, Surface Characterization of Colloidal Silica Nanoparticles by Second Harmonic Scattering: Quantifying the Surface Potential and Interfacial Water Order, J. Phys. Chem. C 123, 20393−20404 (2019), DOI: 10.1021/acs.jpcc.9b05482
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- West, R.G., Bína, D., Fuciman, M., Kuznetsova, V., Litvín, R., Polívka, T. Ultrafast multi-pulse transient absorption spectroscopy of fucoxanthin chlorophyll a protein from Phaeodactylum tricornutum. BBA-Bioenergetics, 1859, 357-365, 2018.
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- West, R,G., Fuciman, M., Staleva-Musto, H., Šebelík, V., Bína, D., Durchan, M., Kuznetsova, V., Polívka, T. Equilibration dependence of fucoxanthin S1 and ICT signatures on polarity, proticity, and temperature by multi-pulse femtosecond absorption spectroscopy. J. Phys. Chem. B, 122, 7264-7276, 2018.
- Brkljača, D. Namjesnik, J. Lützenkirchen,M. Předota, and T. Preočanin. Quartz/Aqueous Electrolyte Solution Interface: Molecular Dynamic Simulation and Interfacial Potential Measurements,J. Phys. Chem. C 122, 24025-24036 (2018). https://dx.doi.org/10.1021/acs.jpcc.8b04035
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- Stranak, V., Kratochvil, J., Olejnicek, J., Ksirova, P., Sezemsky, P., Cada, M., Hubicka, Z., Enhanced oxidation of TiO2 films prepared by high power impulse magnetron sputtering running in metallic mode, Journal of Applied Physics 121, 17, 2017.
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M. Karlický, P. Jelínek, Quasi-periodic processes in the flare loop generated by sudden temperature enhancements at loop footpoints, Astronomy and Astrophysics, 590, A4, 2016. https://doi.org/10.1051/0004-6361/201527306
V. M. Nakariakov, V. Pilipenko, B. Heilig, P. Jelínek, M. Karlický, D. Y. Klimushkin, D. Y. Kolotkov, D.-H. Lee, G. Nisticò, T. Van Doorsselaere, G. Verth, I.V. Zimovets, Magnetohydrodynamic Oscillations in the Solar Corona and Earth's Magnetosphere: Towards Consolidated Understanding, Space Sci. Rev., 200(1), 75, 2016. https://doi.org/10.1007/s11214-015-0233-0
Keşan, G., Litvín, R., Bína, D., Durchan, M., Šlouf, V. Polívka, T. Efficient light-harvesting using non-carbonyl carotenoids: Energy transfer dynamics in the VCP complex from Nannochloropsis oceanica. Biochim. Biophys. Acta, 1857, 370-379, 2016.
Kvíčalová, Z., Alster, J., Johanning, S., Hofmann, E., Khoroshyy, P., Litvín, R., Bína, D., Polívka, T., Pšenčík, J. Triplet-triplet energy transfer from chlorophylls to carotenoids in two antenna complexes from dinoflagellate Amphidinium carterae. Biochim. Biophys. Acta, 1857, 341-349, 2016.
Adamec, F., Greco, J.A., LaFountain, A.M., Magdaong, N.M., Fuciman, M., Birge, R.R., Polívka, T., Frank, H.A. Spectroscopic investigation of a brightly colored psittacofulvin pigment from parrot feathers. Chem. Phys. Lett, 648, 195-199, 2016.
West, R., Keşan, G., Trsková, E., Sobotka, R., Kaňa, R., Fuciman, M., Polívka, T. Spectroscopic properties of the triple bond carotenoid alloxanthin. Chem. Phys. Lett. 653, 167-172, 2016.
Niedzwiedzki, D.M., Tronina, T., Liu, H., Staleva, H., Komenda, J., Sobotka, R., Blankenship, R.E., Polívka, T. Carotenoid-induced non-photochemical quenching in the cyanobacterial chlorophyll synthase-HliC/D complex. BBA-Bioenergetics, 1857, 1430-1439, 2016.
Kloz, M., Weissenborn, J., Polívka, T., Frank, H. A., Kennis, J.T.M. Spectral watermarking in Raman spectroscopy. Phys. Chem. Chem. Phys. 18, 14619-14628, 2016.
Balevičius, V., Abramavicius, D., Pour, A. G., Polívka, T., Hauer, J. A unified picture of S* in carotenoids. J. Phys. Chem. Lett. 7, 3347-3352, 2016.
Pinnola, A., Staleva-Musto, H., Capaldi, S., Ballottari, M., Bassi, R., Polívka, T. Electron transfer between carotenoid and chlorophyll contributes to quenching in the LHCSR1 protein from Physcomitrella patens. BBA-Bioenergetics 1857, 1870-1878, 2016.
Kesan G., Durchan M., Tichý J., Minofar B., Kuznetsova V., Fuciman M., Šlouf V., Parlak C., Polívka T. Different Response of Carbonyl Carotenoids to Solvent Proticity Helps To Estimate Structure of the Unknown Carotenoid from Chromera velia. J. Phys. Chem. B 119, 12653-12663, 2015.
P. Jelínek, M. Karlický, K. Murawski, Electric current filamentation at a non-potential magnetic null-point due to pressure perturbation, The Astrophysical Journal 812, 105, 2015.
P. Jelínek, A. K. Srivastava, K. Murawski, P. Kayshap, B.N. Dwivedi, Spectroscopic Observations and Modelling of Impulsive Alfven Waves Along a Polar Coronal Jet, Astronomy and Astrophysics 581, A131, 2015.
P. Jelínek, M. Karlický, Structured mass density slab as a waveguide of fast magnetoacoustic waves, Cent. Eur. Aphys. Bull 39 (1), 51, 2015.
Fuciman, M., Keşan, G., LaFountain, A., Frank, H.A., Polívka, T. Tuning the spectroscopic properties of aryl carotenoids by slight changes in structure. J. Phys. Chem. B. 119, 1457–1467, 2015.
Staleva, H., Komenda, J., Shukla, M., K., Šlouf, V., Kaňa, R., Polívka, T., Sobotka, R. Mechanism of photoprotection in the cyanobacterial ancestor of plant antenna proteins. Nat. Chem. Biol. 11, 287-291, 2015.
Kroutil, O., Chval, Z., Skelton, A. A., Předota, M. Computer Simulations of Quartz (101)–Water Interface over a Range of pH Values, J. Phys. Chem. C,119, 9274–9286, 2015.
Machesky, M. L., Předota, M., Ridley, M. K., Wesolowski, D. J.: Constrained Surface Complexation Modeling: Rutile in RbCl, NaCl, and NaCF3SO3 Media to 250 °C, J. Phys. Chem. C 119, 15204–15215, 2015.
Ptacek, L., Machlica, L., Linhart, P., Jaska, P., Muller, L.: Automatic Recognition of Bird Individual on the Open Set using as-is Recordings. Bioacoustic Journal, 2015. DOI: 10.1080/09524622.2015.1089524.
A. Majumdar, S.Ch. Das, V. Stranak, R. Hippler, Electronic Bond Structure of Carbon Nitride Thin Film Deposited by HiPIMS and dc Magnetron Plasma. J. Coat. Sci. Technol. 2, (2015), 28-37.
J. Alami, V. Stranak, A-P. Herrendorf, Z. Hubicka, R. Hippler, Design of magnetic field configuration for controlled discharge properties in highly ionized plasma, Plasma Sources Sci. Technol. 24 (2015) 045016.
P. Dytrych, P. Kluson, O. Solcova, S. Kment, V. Stranak, M. Cada, Z. Hubicka, Shape selective photoinduced electrochemical behavior of thin ZnO layers prepared by surfatron, Thin Solid Films 597, (2015), 131.
Staleva, H., Zeeshan, M., Chábera, P., Partali, V., Sliwka, H.R., Polívka, T. Ultrafast dynamics of long homologs of carotenoid zeaxanthin. J. Phys. Chem. A, 119, 11304-11312, 2015.
Durchan, M., Keşan, G., Šlouf, V., Fuciman, M., Staleva, H., Tichý, J., Litvín, R., Bína, D., Vácha, F., Polívka, T. Highly efficient energy transfer from a carbonyl carotenoid to chlorophyll-a in the main light harvesting complex of Chromera velia. Biochim. Biophys. Acta, 1837, 1748-1755, 2014.
Polívka, T., Hofmann, E. Structure-function relationship in peridinin-chlorophyll proteins. In: The Structural Basis of Biological Energy Generation (ed. M. F. Hohmann-Marriott). Vol. 39 of the series Advances in Photosynthesis and Respiration. p. 39-58, Springer, Dordrecht, The Netherlands, 2014.
Polívka, T., Frank, H. A. Spectroscopic investigation of carotenoids involved in nonphotochemical quenching. In: Nonphotochemical Quenching and Energy Dissipation in Plants, Algae and Cyanobacteria (ed. B. Demmig-Adams). Vol. 40 of the series Advances in Photosynthesis and Respiration. p. 203-227, Springer, Dordrecht, The Netherlands, 2014.
H. Mészárosová, M. Karlický, P. Jelínek, J. Rybák, Magnetoacoustic waves propagating along a dense slab and Harris current sheet and their wavelet spectra, The Astrophysical Journal 788, 44, 2014.
S. Parez, M. Předota, and M. Machesky: “Dielectric Properties of Water at Rutile and Graphite Surfaces: Effect of Molecular Structure”, J. Phys. Chem. C 118, 4818-4834 (2014).
P. Jelínek, M. Karlický, Magnetoacoustic waves in diagnostics of the flare current sheets, Astronomy and Astrophysics 537, A46, 2012.
P. Jelínek, M. Karlický, K. Murawski, Magnetoacoustic waves in a vertical flare current-sheet in a gravitationally stratified solar atmosphere, Astronomy and Astrophysics 546, A49, 2012.
Vredenberg, W., Durchan, M., Prášil, O.: The analysis of PS II photochemical aktivity using single and multi-turnover excitations. J. Photochem. Photobiol. B 107: 45-54, 2012.
Durchan, M., Tichý, J., Litvin, R., Šlouf, V., Gardian, Z., Hříbek, P., Vácha, F., Polívka, T.: Role of carotenoids in light-harvesting processes in an antenna protein from the chromophyte Xanthonema debile. J. Phys. Chem. B 116: 8880-8889, 2012.
Durchan, M., Fuciman, M., Šlouf, V., Keşan, G., Polívka, T.: Excited-state dynamics of monomeric and aggregated carotenoid 8´-apo-β-carotenal. J. Phys. Chem. A 116: 12330-12338, 2012.
S. Pařez and M. Předota: “Determination of Distance-dependent Viscosity of Mixtures in Parallel Slabs using Non-equilibrium Molecular Dynamics”, Phys. Chem. Chem. Phys. 14, 3640-3650 (2012).
I. Romancová, Z. Chval and M. Předota: “Influence of the Environment on the Specificity of the Mg(II) Binding to Uracil”, J. Phys. Chem. A 116, 1786−1793 (2012).
M. Kabeláč, O. Kroutil, M. Předota, F. Lankaš and M. Šíp: “Influence of a Charged Graphene Surface on the Orientation and Conformation of Covalently Attached Oligonucleotides: A Molecular Dynamics Study”, Phys. Chem. Chem. Phys. 14, 4217–4229 (2012).
D. J. Wesolowski, J. O. Sofo, A. V. Bandura, Z. Zhang, E. Mamontov, M. Předota, N. Kumar, J. D. Kubicki, P. R. C. Kent, L. Vlcek, M. L. Machesky, P. A. Fenter, P. T. Cummings, L. M. Anovitz, A. Skelton, J. Rosenqvist: “The Rutile (110)-Water Interface: A comment on “Structure and Dynamics of Liquid Water on Rutile TiO2(110)” by L.-M. Liu, C. Zhang, G. Thornton and A. Michaelides”, Phys. Rev. B 85, 167401 (2012).
Dall’Osto L., Holt N.E., Kaligotla S., Fuciman M., Cazzaniga S., Carbonera D., Frank H.A., Alric J., Bassi R.: Zeaxanthin Protects Plant Photosynthesis by Modulating Chlorophyll Triplet Yield in Specific Light-harvesting Antenna Subunits, J. Biol. Chem. DEC 2012, 287, 41820-41834.
Fuciman M., Enriquez M.M., Polívka T., Dall’Osto L., Bassi R., Frank H.A.: Role of Xanthophylls in Light Harvesting in Green Plants: A Spectroscopic Investigation of Mutant LHCII and Lhcb Pigment-Protein Complexes, J. Phys. Chem. B MAR 2012, 116, 3834-3849.
Maiuri M., Polli D., Brida D., Lueer L., LaFountain A.M., Fuciman M., Cogdell R.J., Frank H.A., Cerullo G.: Solvent-dependent activation of intermediate excited states in the energy relaxation pathways of spheroidene, Phys. Chem. Chem. Phys. 2012, 14, 6312-6319.
V. Šlouf, P. Chábera, J.D. Olsen, E.C. Martin, P. Qian, C.N. Hunter, T. Polívka. Photoprotection in a purple phototrophic bacterium mediated by oxygen-dependent alteration of carotenoid excited-state properties. Proc. Natl. Acad. Sci. U.S.A. 109, 8570–8575, 2012.
M. Karlický, P. Jelínek, H. Mészárosová, Magnetoacoustic waves in the narrowband dm-spikes sources, Astronomy and Astrophysics 529, A96, 2011.
P. Jelínek, G. Hensler, The Collisions of High Velocity Clouds with Galactic Halo, Comp. Phys. Commun. 182, 1784-1789, 2011.
Chábera, P., Durchan, M., Shih, P.M., Kerfeld, C.A., Polívka, T.: Excited-state properties of the 16 kDa red carotenoid protein from Arthrospira maxima. Biochim. Biophys. Acta 1807: 30-35, 2011.
M. Machesky, D. Wesolowski, J. Rosenqvist, M. Předota, L. Vlcek, M. Ridley, V. Kohli, Z. Zhang, P. Fenter, P. Cummings, S. Lvov, M. Fedkin, V. Rodriguez-Santiago, J. Kubicki, and A. Bandura: “Comparison of Cation Adsorption by Isostructural Rutile and Cassiterite”, Langmuir 27, 4585–4593 (2011).
Niedźwiedzki D., Fuciman M., Kobayashi M., Frank H.A., Blankenship R.E.: Ultrafast time-resolved spectroscopy of the light-harvesting complex 2 (LH2) from the photosynthetic bacterium Thermochromatium tepidum, Photosynth. Res. OCT 2011, 110, 49-60.
Bould J., Base T., Londesborough M.G.S., Oro L.A., Macias R., Kennedy J.D., Kubát P., Fuciman M., Polívka T., Lang K.: Reversible Capture of Small Molecules On Bimetallaborane Clusters: Synthesis, Structural Characterization, and Photophysical Aspects, Inorg. Chem. AUG 2011, 50, 7511-7523.
Niedźwiedzki D.M., Fuciman M., Frank H.A., Blankenship R.E.: Energy transfer in an LH4-like light harvesting complex from the aerobic purple photosynthetic bacterium Roseobacter denitrificans, BBA-Bioenergetics MAY 2011, 1807, 518-528.
Fuciman M., Enriquez M.M., Kaligotla S., Niedźwiedzki D.M., Kajikawa T., Aoki K., Katsumura S., Frank H.A.: Singlet and Triplet State Spectra and Dynamics of Structurally Modified Peridinins, J. Phys. Chem. B APR 2011, 115, 4436-4445.
Zhang Y., LaFountain A.M., Magdaong N., Fuciman M., Allen J.P., Frank H.A., Rusling J.F.: Thin Film Voltammetry of Wild Type and Mutant Reaction Center Proteins from Photosynthetic Bacteria, J. Phys. Chem. B MAR 2011, 115, 3226-3232.
Kubát P., Šebera J., Záliš S., Langmaier J., Fuciman M., Polívka T., Lang K.: Charge transfer in porphyrin-calixarene complexes: ultrafast kinetics, cyclic voltammetry, and DFT calculations, Phys. Chem. Chem. Phys. 2011, 13, 6916-6923.
V. Šlouf, S.P. Balashov, J.K. Lanyi, T. Pullerits, T. Polívka. Carotenoid response to retinal excitation and photoisomerization dynamics in xanthorhodopsin. Chem. Phys. Lett. 516, 96–101, 2011.
P. Jelínek, M. Karlický, Impulsively Generated Wave Trains in a Solar Coronal Loop, IEEE Trans. Plasma Sci. 38, No. (9), 2243-2248, 2010.
Durchan, M., Herbstová, M., Fuciman, M., Gardian, Z., Vácha, F., Polívka, T.: Carotenoids in energy transfer and quenching processes in Pcb and Pcb-PS I complexes from Prochlorothrix hollandica. J. Phys. Chem. B 114: 9275-9282, 2010.
M. Předota, I. Nezbeda, and S. Pařez: “Coarse-grained potential for interaction with a spherical colloidal particle and planar wall”, Collect. Czech. Chem. Commun. 75, 527-545 (2010).
Fuciman M., Chábera P., Župčanová A., Hříbek P., Arellano J.B., Vácha F., Pšenčík J., Polívka T.: Excited state properties of aryl carotenoids, Phys. Chem. Chem. Phys. 2010, 12, 3112-3120.
Enriquez M.M., Fuciman M., LaFountain A.M., Wagner N.L., Birge R.R., Frank H.A.: The Intramolecular Charge Transfer State in Carbonyl-Containing Polyenes and Carotenoids, J. Phys. Chem. B OCT 2010, 114, 12416-12426.
Chábera P., Fuciman M., Naqvi K.R., Polívka T.: Ultrafast dynamics of hydrophilic carbonyl carotenoids - Relation between structure and excited-state properties in polar solvents, Chem. Phys. JUL 2010, 373, 56-64.
Enriquez M.M., LaFountain A.M., Budarz J., Fuciman M., Gibson G.N., Frank H.A.: Direct determination of the excited state energies of the xanthophylls diadinoxanthin and diatoxanthin from Phaeodactylum tricornutum, Chem. Phys. Lett. JUN 2010, 493, 353-357.
P. Jelínek, M. Karlický, Computational Study of Impulsively Generated Waves in a Solar Coronal Loop, Eur. Phys. J. D 54, 305-311, 2009.
P. Bartoš, J. Blažek, P. Jelínek, P. Špatenka, Hybrid Computer Simulations: Electrical Charging of Dust Particles in Low-Temperature Plasma, Eur. Phys. J. D 54, 319-323, 2009.
Pavlovič, A., Demko, V., Durchan, M., Hudák, J.: Feeding with aminolevulinic acid increased chlorophyll content in Norway spruce (Picea abies) in the dark. Photosynthetica 47: 631-634, 2009.
Pavlovič, A., Slováková, Ľ., Demko, V., Durchan, M., Mikulová, K., Hudák, J.: Chlorophyll biosynthesis and chloroplast development in etiolated seedlings of Ginkgo biloba L. Photosynthetica 47: 510-516, 2009.
Vredenberg, W., Durchan, M., Prášil, O.: Photochemical and photoelectrochemical quenching of chlorophyll fluorescence in photosystem II. Biochim. Biophys. Acta 1787: 1468-1478, 2009.
Chábera P., Fuciman M., Hříbek P., Polívka T.: Effect of carotenoid structure on excited-state dynamics of carbonyl carotenoids, Phys. Chem. Chem. Phys. 2009, 11, 8795-8803.
Polívka, T., Pšenčík, J., Kroh, P., Engst, D., Prášil, O., Falkowski, P.G., Hála, J. Hole-burning study of energy transfer in antenna proteins of Dunaliella tertiolecta affected by iron-limitation. Mol. Cryst. Liq. Cryst. 291, 111, 1996.
Engst, D., Kroh, P., Polívka, T., Pšenčík, J., Nedbal L., Hála, J.: Hole burning and low temperature absorption and fluorescence spectroscopy of algae affected by UV-B stress, Mol. Cryst. Liq. Cryst. 291, 103, 1996.
Kroh, P., Pšenčík, J., Polívka, T., Engst, D., Hála, J.: Laser induced hole filling in bacteriochlorophyll d monomers and aggregates of green sulphur photosynthetic bacteria antennae, Mol. Cryst. Liq. Cryst. 291, 201, 1996
Polívka, T., Kroh, P., Pšenčík, J., Engst, D., Komenda, J., Hála, J