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PRF

Specialization UAI

Department of Computer Science

  • Security and network

    Specialization "Security and Network" of the study program Applied Informatics is focused to graduate's profile to be able to design and secure end information systems, networkl infrastructure, and digital documents.  

    Except traditional teaching, this specialization offers certified courses of network technologies, and practices. We actively cooperate with the following companies:

    • Cisco
    • Telefónica O2
    • CESNET
    • CZ.NIC
    • National Security Authority

    This specialization is controlled by the Security and Network Department of the Institution od Applied Informatics (UAI) PřF JU.

  • Embedded sytems

    Specializace embedded systémy a robotika rozšiřuje hlavní obor Aplikované informatiky. Studenti získají praktické zkušenosti s číslicovými, automatizačními, robotickými platformami.

    At present, diversity and number of embedded systems enlarges significantly. This segment has become one of the most important industry sectors. E.g. the implementation into automotive electronics is extremely interesting because of strict requirements of timing and reliability, which act as technological catalysts. The market with embedded systems is the most advanced system in the world. 

    The student of this specialization will use theoretical and practical knowledge of common base and programming. In addition, students of this specialization will understand robotic platforms.

    The graduate of this specialization should be able to:

    • understand robotic subsystems,
    • understand basics of autonomous control of robotic platforms,
    • orient in embedded systems and analyze possibilities of their usage,
    • understand and describe basic items of microprocessor systems,
    • construct of connwctions of embedded systems,
    • test functions of microprocessor systems,
    • anylyze computational requirements of algorithms of digital data processing,
    • program basic algorithms of control and automation technique,
    • technically usemicroprocessor circuits,
    • interconnect mobile and embedded systems.
  • Management IS

    Recommended study flow

  • Web and Multimedia

    The specialization "Web and Multimedia" of the study program Applied Informatics is focused on the profile of a graduate educated in the design and implementation of complex web applications and their security. 

    The graduate should be able to participate in development in a team, or independently design and create a competent web application from the database to the front end. Within the specialization, increased attention is paid mainly to the programming of multi-layer applications with a web interface.

    In addition to the subjects common to all specializations (marked in green), three basic axes are defined, which are represented by individual subjects:

    • Programming
    • Security
    • Multimedia

    As some objects follow each other, it is possible to orient yourself according to the diagram below (without guarantee). It should provide a basic idea of ​​compulsory subjects and their distribution into a three-year study. 

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Eva Novakova (arthropods, symbionts, microbiomes)

Katedra parazitologie

Eva Novakova (arthropods, symbionts, microbiomes)

  • Publications

    Brown, J. J., Rodríguez-Ruano, S. M., Poosakkannu, A., Batani, G., Schmidt, J. O., Roachell, W., Hypša V. & Nováková, E. (2020). Ontogeny, species identity and environment dominate microbiome dynamics in wild populations of kissing bugs (Triatominae). Microbiome. In Press.

    Martinů, J., Štefka, J., Poosakkannu, A., & Hypša, V. (2020)." Parasite turnover zone" at secondary contact: a new pattern in host-parasite population genetics. Molecular ecology. doi:10.1111/mec.15653

    Rodríguez-Ruano, S. M., Juhaňáková, E., Vávra, J., & Nováková, E. (2020). Methodological insight into mosquito microbiome studies. Frontiers in cellular and infection microbiology10, 86. doi: 10.3389/fcimb.2020.00086

    Song, S.J., Sanders, J.G., Baldassarre, D.T., Chaves, J.A., Johnson, N.S., Piaggio, A.J., Stuckey, M.J., Nováková, E., Metcalf, J.L., Chomel, B.B. and Aguilar-Setién, A.. (2019). Is there convergence of gut microbes in blood-feeding vertebrates?. Philosophical Transactions of the Royal Society B374(1777), 20180249. do: 10.1098/rstb.2018.0249

    Rodríguez-Ruano, S. M., Martín-Vivaldi, M., Peralta-Sánchez, J., García-Martín, A., Martínez-García, Á., Soler, J., et al. (2018). Seasonal and sexual differences in the microbiota of the hoopoe uropygial secretion. Genes, 9: 407. doi:10.3390/genes9080407.

    Rodríguez-Ruano S. M.Škochová V., Rego R. O. M., Schmidt J. O., Roachell W., Hypša V.Nováková E. 2018. Microbiomes of North American Triatominae: The grounds for Chagas disease epidemiology. Frontiers in Microbiology, 9. doi:10.3389/fmicb.2018.01167.

    Păstrav, I. R., Ionică, A. M., Peştean, C., Novakova, E., Modrý, D., & Mihalca, A. D. (2018). Peripheral venous vs. capillary microfilariaemia in a dog co-infected with Dirofilaria repens and D. immitis: A comparative approach using triatomine bugs for blood collection. Veterinary parasitology257, 54-57.

    Šochová E., Husník F., Nováková E., Halajian A., Hypša V. 2017. Arsenophonus and Sodalis replacements shape evolution of symbiosis in louse flies. PeerJ 5. doi:10.7717/peerj.4099.

    Pistone D., Pajoro M., Novakova E., Vicari N., Gaiardelli C., Viganò R., Luzzago C., Montagna M., Lanfranchi P. 2017. Ticks and bacterial tick-borne pathogens in Piemonte region, Northwest Italy. Experimental and Applied Acarology, Epub ahead of print. doi: 10.1007/s10493-017-0202-2.

    Ríhová J.Nováková E., Husník F., Hypša V. 2017. Legionella becoming a mutualist: Adaptive processes shaping the genome of symbiont in the louse Polyplax serrata. Genome Biology and Evolution, Epub ahead of print. doi: 10.1093/gbe/evx217.

    Novakova E., Woodhams D. C. W., Rodriguez-Ruano S. M., Brucker R. M., Leff J. W., Maharaj A., Amir A., Rob Knight R., Scott J. 2017. Mosquito microbiome dynamics, a background for prevalence and seasonality of West Nile Virus. Frontiers in Microbiology, 8: 526. doi: 10.3389/fmicb.2017.00526.

    Thairu M. W., Skidmore I. H., Bansal R., Nováková E., Hansen T. E., Li‐Byarlay H., Wickline S. A., Hansen A. K. 2017. Efficacy of RNA interference knockdown using aerosolized short interfering RNAs bound to nanoparticles in three diverse aphid species. Insect Molecular Biology. doi: 10.1111/imb.12301 

    Nováková E.Hypša V., Nguyen P., Husník F., Darby A.C. 2016. Genome sequence of Candidatus Arsenophonus lipopteni, the exclusive symbiont of a blood sucking fly Lipoptena cervi (Diptera: Hippoboscidae). Standards in Genomic Sciences, 11: 72.

    Nováková E.Husník F., Šochová E. and Hypša V.. 2015. Arsenophonus and Sodalis symbionts in louse flies: An analogy to the Wigglesworthia and Sodalis system in tsetse flies. Applied and Environmental Microbiology 81(18): 6189–6199.

    Nováková E., Hypša V., Klein J., Foottit R.G., Dohlen C.D., Moran N.A. 2013. Reconstructing the phylogeny of aphids (Hemiptera: Aphididae) using DNA of the obligate symbiont Buchnera aphidicola. Molecular Phylogenetics and Evolution 68: 42-54.

    Chrudimský T., Husník F., Nováková E. and Hypša V., 2012. Candidatus Sodalis melophagi sp. nov.: phylogenetically independent comparative model to the tsetse fly symbiont Sodalis glossinidius. PLoS ONE 7(7): e40354.

    Nováková E. and Moran N.A., 2012. Diversification of genes for carotenoid biosynthesis in aphids following an ancient transfer from a fungus. Molecular Biology and Evolution 29: 313-323

    Wilkes T.E., Duron O., Darby A.C., Hypša V., Nováková E. and Hurst G.D.D., 2011. The genus Arsenophonus. In: E Zchori-Fein & K Bourtzis ed(s). Manipulative Tenants. New York, CRC Press, pp 225-241.

    Nováková E., Hypša V., Moran N.A., 2009. Arsenophonus, an emerging clade of intracellular symbionts with a broad host distribution. BMC Microbiology 9: 143.

    Hypša V., and Nováková E., 2008. Insect symionts and molecular phylogenetics. In: Insect Symbiosis, Volume 3. Eds. K. Bourtzis and T. A Miller. CRC Press, pp 1-22.

    Nováková E., and Hypša V., 2007. A new Sodalis lineage from bloodsucking fly Craterina melbae (Diptera, Hippoboscoidea) originated independently of the tsetse flies symbiont Sodalis glossinidius. FEMS Microbiology Letters 269: 131-135.

     

  • News and activities

    4.10.2020
    Very happy to announce that our cross-species study on kissing bugs and their microbiome is going to be published in Microbiome journal this month. Thanks to Sonia, Joel, Anbu and Giampiero who all worked hard on this piece of puzzle! Stay tuned for the Video Byte: https://youtu.be/O3szwbEOcVg

    19.08 - 24.08.2019
    Sonia & Giampiero both present their recent work at the ESEB conference in Turku, Finland.

    25.06 - 10.07.2019
    Eva, Joel and Giampiero undertake triatomine sampling fieldwork and more collaborator visits in southern California and Arizona.

    15.06 - 21.06.2019
    Joel presents insect-microbiome metacommunities at the Animal-Microbe Symbioses Gordon Research Conference in Vermont, USA.

    01.05 - 31.10.2019
    Sonia joined the Aquatic Ecology department at EAWAG (Switzerland) for a collaboration in mosquito experimental research.

    12.04.2019
    Anbu Poosakkannu joined the group.

    24.03 - 29.03.2019
    Eva presents at the Tropical Infectious Diseases Gordon Research Conference in Galveston, Texas, then carries out fieldwork with collaborator Walter Roachell in southern Texas.

    27.02.2019
    Esther Navarro González joined the group.

    21.01.2019
    Giampiero Batani joined the group.

    25.06 - 15.07.2018
    Eva, Joel and Sonia go to southern California and Arizona to sample triatomines and visit collaborators Allison Hansen, Patrick Degnan, Justin Schmidt, Stephen Klotz, Norman Beatty, Nicole Bradley-Behrens, Molly Hunter, and Bob Smith.


    01.05.2018
    The project "Interplay of mosquitoes, bacterial symbionts and viruses in Europe" was awarded by the Marie Sklodowska-Curie Actions – Individual Fellowships of the Ministry of Education, Youth and Sports of the Czech Republic, supported by European funds to Sonia M Rodríguez-Ruano, under the supervision of Eva Nováková for the next 2 years.

    01.12.2017
    The project "Ecological stability and significance of the microbiomes in blood feeding subfamily Triatominae, vectors of Chagas disease" was awarded by the GACR Junior program of the National Grant Agency of the Czech Republic to Eva Nováková as PI. Congratulations!

    06.07.2017
    Eva and Sonia presented the latest results at the SMBE Conference organized by the Society for Molecular Biology and Evolution, celebrated in Austin, Texas, USA.

    19.03.2017
    Eva and Sonia presented test at the 'What is new in Microbiology: Conference for young microbiologists organized by the Czechoslovak Society for Microbiology', celebrated in Demänovská dolina, Slovakia.

    01.05.2016
    Sonia M. Rodríguez-Ruano joined the group.

  • Research

    Symbiosis in kissing bugs (Triatominae)

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People

    • Eva Novakova, PhD

    • Associate Professor

    • This email address is being protected from spambots. You need JavaScript enabled to view it.

The main research of our group focuses on bloodsucking insects, their bacterial symbionts, and transmitted pathogens/parasites. Primarily, we focus on kissing bugs (Triatominae), Chagas' disease, and the role of the host microbiome within the context of the insect-pathogen relationship. We also study animal-microbe symbioses in mosquitoes, chewing lice, and sucking lice. We use cutting-edge molecular techniques to resolve these symbiotic relationships in both ecological and evolutionary contexts.

Postdocs

  • Ruma Raghuvanshi , Ph.D.

  • Postdoctoral Associate

  • Symbiosis and host-bacteria dynamics in bloodsucking insects (kissing bugs).

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  • Anna Maria Floriano, Ph.D.

  • Postdoctoral Associate

  • Symbiosis and host-bacteria dynamics in bloodsucking arthropods (kissing bugs, ticks).

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  • Sazzad Mahmood, Ph.D.
    Postdoctoral Associate

  • Genomics of bacterial symbionts of insects.

  • Václav Hypša team

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Haq Shaik, Ph.D.
Postdoctoral Associate

Ph.D. STUDENTS

  • Jana Říhová

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LAB TECHNICIANS

Jan Zima, Ph.D.

Read more …Eva Novakova (arthropods, symbionts, microbiomes)

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Winter Arctic Ecology 2017

Centre for Polar Ecology

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