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PRF

GeoMicLink: Microbial imprint in catchment scale nutrient retention

(Co)investigator from the Department: Karolina Tahovská
Funding provider: The Czech Science Foundation
Duration: 2020 - 2022

Project goals: 

To evaluate links among pools, fluxes and stoichiometry of carbon and nutrients in microbe-soil-water system on acidification and eutrophication gradients across forested catchments. To determine and quantify the role of microbes in nutrient retention and include microbes into modelling framework.

Project description: 

The availability of nitrogen (N) and phosphorus (P) controls many aspects of ecosystem function including ecosystem productivity, organic matter decomposition and consequent ecosystem elements retention including carbon (C) storage. Since 1994 a network of forested catchments (GEOMON) has been used for biogeochemical assessment of nutrient fluxes of semi-natural forest ecosystems in the Czech Republic. We found stoichiometric imbalance of carbon and nutrients between stream and soil suggesting important role of soil microbial transformations in nutrient retention. We propose that by combining data on long-term catchment solute fluxes, with catchment soil chemistry, microbial activity and community characteristics along acidification and eutrophication gradient we will be able to elucidate and generalized (regional extent) the role of microbes in nutrient retention at the catchment scale. Furthermore, obtained data will be used to calibrate updated biogeochemical model MAGIC to correctly predict soil and stream chemistry under changing deposition loads of both acidity and nitrogen.

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CRYOVULCAN - Vulnerability of carbon in Cryosols – substrate-microorganisms-aggregate interactions

(Co)investigator from the Department: Jiří Bárta
Funding provider: Grantová agentura České republiky
Duration: 2020 - 2022

Project description: 
Permafrost thawing is likely the most important natural process that may translocate carbon (C) from terrestrial ecosystems to the atmosphere as response to global warming, thus initiating a positive feedback to climate change. While several estimates on C losses have been made for the next decades, major processes in soil development after permafrost thawing have not been accounted yet. Depending on ice richness and soil drainage, permafrost degradation can result in wetter or drier conditions.

Contrasting environmental conditions evolving under these scenarios will critically influence biotic-chemical processes shifting the microbial community composition, leading to different organic matter (OM) decomposition and potential OM stabilization processes. Based on a conceptual framework on permafrost thaw under dry and wet scenario, the main objective of CRYOVULCAN is to comparatively investigate OM decomposition and stabilization under these two scenarios. Our main hypothesis is that chemical and biological attenuation processes will partly compensate for the organic carbon (OC) losses caused by permafrost thaw. Under (1) a dry, oxic "rusty" scenario we hypothesize chemical and biological stabilization processes to be more pronounced, leading to aggregation and mineral-organic associations and partly compensate for the OC losses. Under (2) a wet, anoxic "pale" scenario low oxygen likely leads to a reduction of the microbial ability to decompose particularly lignin due to less efficient laccases and peroxidases of anaerobes. We have assembled a Czech-German interdisciplinary consortium with complementary expertise in soil science, soil microbiology and metagenomics, which will face the challenge by a unique combination of field and laboratory experiments. In the field, our studies are based on a comparison of intact permafrost soils with soils undergoing degradation under the two contrasting scenarios. Employing state-of-the art molecular, biomarker and spectroscopic techniques, the response of the microbial community composition, extracellular enzymes, metatranscriptomes on the different soil environmental conditions and the respective stabilization of OM species in the soils will be investigated. An in-situ 13C labeling experiment will further inform about the microbial utilization and fate of fresh substrate, depending on the environmental condition. Finally, specific incubation experiments will identify the impact of freeze-thaw cycles in OM processing, as well as the role of increasing root exudation in the formation of mineral-organic complexes in the dry scenario and the lignin decomposition potential in the wet scenario.

CRYOVULCAN will thus contribute to the urgently needed knowledge on the effect of the soil hydrological regime on OM stabilization in degraded permafrost soils, which will control the magnitude of greenhouse gases release to the atmosphere in a warmer world.

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Completed projects

Department of Ecosystem Biology

2024

Petr Šmilauer
(GAČR, 2022 - 2024)

Karolina Tahovská
(GAČR, 2022 - 2024)

Jaroslav Vrba
(GAČR, 2022 - 2024)

Jana Jersáková
(GAČR, 2022 - 2024)

Zuzana Urbanová
(LIFE, 2018 - 2024)

2022

Jiří Bárta
(GAČR, 2020 - 2022)


Petr Čapek
(GAČR, 2020 - 2022)


Eva Kaštovská
(GAČR, 2020 - 2022)
Karolina Tahovská
(GAČR, 2020 - 2022)
David Boukal
(GAČR, 2020 - 2022)

2021

(GAČR, 2019 - 2021)

(GAČR, 2019 - 2021)


Hana Šantrůčková
(GAČR, 2019 - 2021)


(GAČR, 2019 - 2021)

2020

(GAČR, 2018 - 2020)


(GAČR, 2018 - 2020)

2019

(GAČR, 2017 - 2019)


Hana Šantrůčková
(GAČR, 2017 - 2019)


(GAČR, 2017 - 2019)

2018

(GAČR, 2016 - 2018)

2017

(GAČR, 2013 - 2017)


(GAČR, 2015 - 2017)

POTŘEBA DOPLNIT


2016

(GAČR, 2014 - 2016)

(GAČR, 2014 - 2016)


(GAČR, 2014 - 2016)

Hana Šantrůčková
(GAČR, 2012 - 2016)


(GAČR, 2014 - 2016)

POTŘEBA DOPLNIT





(GAČR, 2013 - 2016)

2015

(OPŽP, 2012 - 2015)

2014

(GAČR, 2011 - 2014)

2011

(GAAV, 2009 - 2011)

Read more …Completed projects

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Water

Department of Ecosystem Biology

Wanted: Postdoc candidate in Quantitative Freshwater Biology for a Junior Group Leader position

Our group, in close cooperation with the Institute of Hydrobiology, BC CAS, studies freshwater lentic ecosystems (e.g. glacial lakes in the Bohemia Forest, manmade reservoirs and fishponds), partly also streams and other interesting freshwaters, ensures specialized undergradute education in Hydrobiology (limnology) in both bachelor and master programs and guarrants the doctoral study programme in Hydrobiology/Limnology

Our research is focused on biotic interactions between aquatic organisms and their interactions with abiotic fcktors, both at a holistic level of entire ecosystem or catchment and under controlled experimental lab (cultivation experiments) or open-air conditions (mesocosms). We provide integration into multidisciplinary teams and joint projects of our Department and the Institute of Hydrobiology that enable training of various approaches and methods, such as current chemical analyses, traditional taxonomy and ecophysiology, molecular analyses, including microbial metagenomics and metatranscriptomics, and ecological modelling.


Our recent projects has been focused, e.g., on problems of eutrophication or acidification of freshwaters in relation to soil processes in the catchment, the role of bacteria and phytoplankton in organic matter and nutrient cycling, on interaction between microorganisms and aquatic macrophytes, or top-down effects of both invertebrate and fish predation on zooplankton structure, population dynamics and ecology of fish in reservoirs and post-mining lakes.

Read more …Water

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