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Archaeobotany - macroremains

Laboratory of Archaeobotany and Palaeoecology

Archaeobotanical analysis of plant macroremains

This specialization is based on the finding, separation and determination and evaluation of botanical macro-remains from different contexts of archaeological sites. A lot of layers and archaeological fills are situated on common "dry" sites with prehistoric and early medieval settlement and burial places. An important part of the analysed features are situated in permanently wet positions, like for example wells, cesspits, water systems, cellars and so on. The investigated objects are usually plant seeds and their fragments, but also needles, chaff and the remains of straw. It is possible to evaluate which useful plants were used or collected on the basis of a determination of the plant structure (cereals, legumes, fruits, vegetables, spices, technical plants) and not only this: in accordance with the natural plant species structure it is possible to roughly reconstruct the immediate vicinity of an archaeological site (arable fields, meadows, waste areas, wetlands, forests, woods and shrub formations.

morus-nigra

Mulberry (Morus nigra), found in Ústí na Labem in a medieval well. Photo by V. Komárková

The nature of the information is particularly important for archaeologists, because it is the main subject of any palaeoeconomical reconstruction. Based on macro-remains analyses it is possible to observe processes of cereal domestication in prehistory and indirectly the development of archaic systems of agriculture. Within the setting of a specific site relations between cultivated and collected plants are also visible. The spatial analysis of archaeobotanical macro-remains is also very attractive to archaeologists, e.g. the distribution of different species on larger archaeological sites etc. Today, larger sets of captured plants are evaluated by multivariate data analysis, which helps to find hidden information in them.

In paleoecological studies, the importance of macroresidue analysis lies primarily in its local character, in contrast to the results of anthracological or pollen analysis.

caucalis-lappula

Carrot bur parsley (Caucalis plytycarpos) found in Ústí na Labem in a medieval well. Photo by V. Komárková

Wells, sumps, swamps – macro-residual treasure troves

A moist environment without access to air is extremely suitable for preserving organic material, i.e. also plant macro-residues. Thanks to it, even those parts of plants that would otherwise perish (soft seeds or whole fruits, leaves, etc.) can be preserved. Wells or sumps also have the advantage that a variety of waste (kitchen, fecal, production, etc.) was intentionally deposited in them. Therefore, we find in them macro-residues in high concentrations, which give us relatively detailed information about what people used to eat in the past, where the hay they fed their cattle came from, and so on. On the other hand, the damp fillings of ditches or blind branches of rivers inform us more about how the nature around them has changed over the ages.

In the younger stages of European prehistory, the analysis of macro-residues can capture the influences of classical Roman agriculture. Significant changes in the structure of agricultural production can be observed on the border between the early and high Middle Ages, but also at the beginning of the modern age. In certain cases, the analysis of plant macro-residues can capture very rare finds of imported plant species, such as nutmeg, fig tree or black pepper. Among wild plant species, once common, now very rare plants, such as cattails, sometimes appear in the analyzed material. Today, larger sets of captured plants are evaluated by multivariate data analysis.

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Methodology

Soil samples are usually collected in plastic bags (as a general rule, the more the merrier). They are then washed through sieves and dried. Finally, plant macro-residues are selected and determined in them under a stereoscopic magnifying glass. Almost all types of archaeological deposits are suitable for capturing plant macro-remains. The basic method of separation is flotation. However, there is a big difference in the concentration of plant macro-residues per certain volumetric unit of sediment. In prehistoric objects of "dry" localities (Neolithic building pits, reservoirs, semi-earthen pits, etc.), a large volume of soil must be washed away in order to obtain a numerically representative sample of macro-residues (the recommended minimum is the analysis of 100 liters of deposit or fill). For these large volumes, the flotation method is used. Its principle is the melting and dilution of the deposit material in larger containers. Plant macro-residues float to the surface of the water. This solution is then poured through a set of sieves, usually with mesh diameters of 1 mm and 0.4 mm. Dry sieving is used for particularly dry and sandy deposits.

On the contrary, we can expect a high concentration of plant macro-residues in some fillings of prehistoric, but especially medieval and modern objects, such as wells, fecal pits, or wet ditches. Other separation methods are used here, based on a system of sieves, with the help of which the studied sediment is sorted into dimensional fractions and analyzed under a microscope, including the inorganic component. For such concentrated deposits, it is usually sufficient to analyze 2-5 liters of material.

linum-usitatissimum

Flaxseed (Linum usitatissimum), found in Ústí na Labem in a medieval well. Photo by V. Komárková

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Centre for Polar Ecology

Polar Ecology Course 2024

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Available NTB

If you are interested in purchasing new computer equipment, please contact Jiří Cehak at This email address is being protected from spambots. You need JavaScript enabled to view it.

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Courses to improve Collaboration in V4 Countries to learn about Cryptic fungi

 

Funded by Visegrad Grant 

Three institutions with strong backgrounds in taxonomy, phylogenetics, and genomics of insect-related fungi bring together researchers to share expertise with each other and students. In a series of workshops organized in three V4 countries we will tighten collaborations and stimulate knowledge exchange. A citizen science campaign and lectures open to the general public will also be organized. 

 

Project No. 22420237

Role of FSci in the project: Principal applicant

Project duration: 01 October 2024 - 31 March 2026

Total project cost: 37 878 EUR

Head of project: Danny Haelewaters, PhD (he/him/his)

                           Ghent University & Meise Botanic Garden

                           University of South Bohemia | Universidad Autónoma de Chiriquí

                           Website | X | Beetlehangers

 

Upcoming events and meetings

31 March to 4 April 2025: Citizen science campaign, workshop, and open lecture, České Budějovice, Czechia

https://fb.me/e/2vyolN3FV

 

FUNGAL GENOMICS
8 to 12 September 2025: Workshop on fungal genomics and open lecture, Szeged, Hungary
https://fb.me/e/7LFch4JtW

 

FUNGAL PHYLOGENETICS
16 to 20 February 2026: Workshop on fungal phylogenetics and open lecture, Urwitałt, Poland
https://fb.me/e/4Tbh84ai1 

Read about our latest papers:

 

Polish partner (Julia Pawłowska):

University webpage: https://en.uw.edu.pl/
Faculty of Biology webpage: https://www.biol.uw.edu.pl/en/home-page/
Institute webpage: https://ibe.biol.uw.edu.pl/en/835-2/

 

Hungarian partner (László Nagy):

Institute webpage: https://www.brc.hu/en 
Lab webpage: http://group.szbk.u-szeged.hu/sysbiol/nagy-laszlo-lab-index.html

 

Sources

de Groot MD, Christou M, Pan JY, Adriaens T, Maes D, Martinou AF, Roy HE, Verbeken A, Haelewaters D. Beetlehangers.org: harmonizing host–parasite records of Harmonia axyridis and Hesperomyces harmoniae. Arthropod-Plant Interactions 18(4): 665-679. https://doi.org/10.1007/s11829-023-10037-2

Haelewaters D, Matthews TJ, Wayman JP, Cazabonne J, Heyman F, Quandt CA, Martin TE. 2024. Laboulbeniomycetes as a case study for biodiversity shortfalls in poorly studied groups. Journal of Biogeography 51(1): 29-39. https://doi.org/10.1111/jbi.14725

Haelewaters D, Okrasińska A, Gorczak M, Pfister DH. 2020. Draft genome sequence of the globally distributed cockroach-infecting fungus Herpomyces periplanetae strain D. Haelew. 1187d. Microbiology Resource Announcements 9(6): e01458-19. https://doi.org/10.1128/MRA.01458-19

 

Fruiting bodies of Hesperomyces harmoniae (Laboulbeniales) on the integument of the invasive alien ladybird Harmonia axyridis Coccinellidae)

 

https://www.visegradfund.org/

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Decision of the dean on the rules of admission for the master cross-border study programme Artificial Intelligence and Data Science for year 2025/2026

Decision of the dean on the rules of admission for the master cross-border study programme Artificial Intelligence and Data Science for year 2025/2026

 

In accordance with Sections 48 - 50 of Act 111/1998 Coll. on Higher Education Institutions and the Modifications and Amendments of Other Acts, I announce the rules of admission for entrance into the cross-border master study programme Artificial Intelligence and Data Science at the Faculty of Science, University of South Bohemia in České Budějovice (hereafter FSci USB) for the academic year 2025/2026.

 

Article 1. Study programmes opened

 

Programme

Number of applicants admitted

Study fee

Artificial Intelligence and Data Science

20

3000 EUR/year*

 

 

* Enrolled applicants can apply for a fee reduction, if not granted, students can apply for a scholarship of up to €2000/year.

 

Article 2. Admission deadlines

Applications can be submitted until 4 January 2025. Applicants must include information about their studies ("transcript of records", a copy of the successful completion of the Bachelor's degree and, if applicable, a B2 language certificate).

A certified copy of the proof of successful completion of the bachelor's degree according to the required verification according to the country in which the education was obtained shall be delivered by the applicant no later than 28 February 2025, 11:00 a.m., to the address specified in Article 4, paragraph 1.

Entrance exams will be held during the week of 27 January - 31 January 2025.

The exact date of the interview will be communicated to applicants fulfilling the conditions set out in Article 4(2) at least five days before the interview.

 

On the basis of the applicant's request, the Vice-Dean for Studies may grant an extension of the deadline for the delivery of proof of education.

 

Article 3. Application submission

Applications must be submitted online at https://wstag.jcu.cz/portal/studium/uchazec/eprihlaska.html?pc_lang=en . A copy of the proof of payment of the admission fee is a mandatory attachment to the e-application form, unless the applicant pays by credit card directly from the application environment. The document can be added to the e-application after it has been submitted, but if it is not submitted by the end of the application period by the relevant deadline, the application will be excluded from the admission procedure. Instructions for payment of the fee by bank transfer are given in Article 8 of this Decision.

 

           

Article 4. Admission criteria

1.    Admission is conditional upon completion of higher education at the Bachelor's degree level or above - proof of attainment of this education (officially certified copy of diploma, for applicants from abroad certified documents of education and courses taken; The faculty reserves the right to request higher forms of verification or nostrification) must be delivered to the Study Department of the FSci USB no later than the deadlines specified in Article 2 of this Decision (hand it over in person at the Study Department of the FSci USB or send it by post to the address of the Study Department of the Faculty of Science of the USB, Branišovská 1760, 370 05 České Budějovice so that it can be delivered by the specified deadline - the date of delivery is decisive).

2.    Applicants who have earned at least 90 ECTS credits in computer science and 18 ECTS credits in artificial intelligence and data science, with a weighted average of 2.0, are eligible for admission.

3.    Subject to the above conditions, candidates who satisfy the requirements set out in Article 5 or 6 may be admitted up to the number indicated in Article 1 of this Decision. The ranking of candidates will be established in accordance with the rules set out in Article 5(5).

4.    A candidate applying to a study programme in which he/she is already studying at the Faculty of Science cannot be admitted to this programme.

5.    An applicant whose studies in the same programme have been terminated cannot be admitted.

 

Article 5. Entrance examinations

1.    The Admissions Examination Board is appointed by the Dean on the basis of a proposal from the programme guarantor. Its members are academic staff of the Faculty.

2.    The entrance examination consists of two parts: a knowledge examination in computer science and an English language examination, which tests whether the applicant's language skills are at least B2 SERR level. The English language examination may be replaced by a certificate. Certificates at level B2 and above according to the standardised examination list of the Ministry of Education, Youth and Sports are accepted. An official TOEFL ibT score of at least 72, a TOEFL ITP score of at least 543, a TOEIC score of at least 785, and an IELTS band 6.5 or higher are also accepted. Applicants do not need to submit the document if they have passed the final English Baccalaureate examination at the Faculty of Arts at JU with a grade better than or equal to "very good minus" or if they come from a country where English is the main language.

3.    The knowledge part of the entrance examination is oral, conducted in English. This part of the examination assesses candidates' knowledge of computer science.

4.    To be shortlisted for admission, a candidate must obtain at least 50 % of the points in each part of the examination. Candidates who fail to comply with the rules of any part of the examination will receive zero points.

5.    The exam is held at the seat of the Faculty of Science of JU. At the written request of the candidate, the examination may be conducted by distance learning. Requests to hold the entrance examination by distance mode are approved by the Vice-Dean for Studies on the basis of the opinion of the study programme guarantor.

6.    The result of each part of the examination is classified by points.

7.    Candidates shall be admitted up to the number specified in Article 1 (after deduction of the places filled by candidates admitted under Article 6 without an entrance examination). Any candidate with the same score as the last candidate determined by the number in Article 1 will also be admitted.

 

Article 6. Admissions without entrance examinations

A graduate of a bachelor's degree in computer science at the FSci USB who applies for the master's degree in direct continuity with the bachelor's degree and who had a weighted average of no more than 1.90 for the entire study will be admitted to the study without an entrance examination.

 

Article 7. Applicants with special needs

An applicant with special needs (with disability, chronic illness, or other health problems) has the right to use the support measures and services provided by the university during the entrance examination and, if accepted, also during their study. If they wish to assert this claim, they must select the option YES in the column “Consideration of special needs” in the online application form. After fulfilling all the administrative requirements associated with the application for study, they will be contacted by the staff of the Support Centre for Students with Special Needs and acquainted with the next steps. More detailed information can be obtained on the centre's website (www.centrumssp.jcu.cz), by email (This email address is being protected from spambots. You need JavaScript enabled to view it.) or by telephone (00420 389 036 026). It is also possible to consult with the staff of the centre about the suitability of choice of a study programme before submitting an application for study.

 

Article 8. Admission process fee

1.    The admission process fee is set to 700 CZK.

2.    Payment details are as follows:

Bank: ČSOB

Account Number: 104725778 / 0300

Variable symbol: 6020106

Specific symbol: application ID

  1. The application fee can be paid by the applicant by bank transfer or through the JU payment gateway directly from the e-application.

Article 9. Decision on admission/non-admission

1.    A decision on acceptance or non-acceptance will be sent to each applicant immediately after the evaluation of the overall ranking of applicants.

2.    Unsuccessful applicants shall have the right to appeal to the Dean within 30 days after receiving the decision. If the appeal is rejected, the candidate may present it to the Rector of the University for a final decision. The appeal is to target paragraph 5 of this Decision, otherwise it is to be deemed to be without basis. In formulating the appeal, the applicant has the right to view the documentation of her/his admission process but does not have the right to see the documentation of other applicants or the committee protocols.

 

 

Article 10. Closing remarks

An informative English translation is issued for this Decision. In the event of a conflict between the language versions, the Czech version shall prevail.

 

These conditions for admission were discussed and agreed upon by the Academic Senate of Faculty of Science, University of South Bohemia in České Budějovice on 30 August 2024.

 

 

České Budějovice, 3 September 2024                                                     

 

 

 

 

 

prof. RNDr. František Vácha, Ph.D.

The Dean of the Faculty of Science

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