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CRYOVULCAN - Vulnerability of carbon in Cryosols – substrate-microorganisms-aggregate interactions

(Co)investigator from the Department: Jiří Bárta
Funding provider: Grantová agentura České republiky
Duration: 2020 - 2022

Project description: 
Permafrost thawing is likely the most important natural process that may translocate carbon (C) from terrestrial ecosystems to the atmosphere as response to global warming, thus initiating a positive feedback to climate change. While several estimates on C losses have been made for the next decades, major processes in soil development after permafrost thawing have not been accounted yet. Depending on ice richness and soil drainage, permafrost degradation can result in wetter or drier conditions.

Contrasting environmental conditions evolving under these scenarios will critically influence biotic-chemical processes shifting the microbial community composition, leading to different organic matter (OM) decomposition and potential OM stabilization processes. Based on a conceptual framework on permafrost thaw under dry and wet scenario, the main objective of CRYOVULCAN is to comparatively investigate OM decomposition and stabilization under these two scenarios. Our main hypothesis is that chemical and biological attenuation processes will partly compensate for the organic carbon (OC) losses caused by permafrost thaw. Under (1) a dry, oxic "rusty" scenario we hypothesize chemical and biological stabilization processes to be more pronounced, leading to aggregation and mineral-organic associations and partly compensate for the OC losses. Under (2) a wet, anoxic "pale" scenario low oxygen likely leads to a reduction of the microbial ability to decompose particularly lignin due to less efficient laccases and peroxidases of anaerobes. We have assembled a Czech-German interdisciplinary consortium with complementary expertise in soil science, soil microbiology and metagenomics, which will face the challenge by a unique combination of field and laboratory experiments. In the field, our studies are based on a comparison of intact permafrost soils with soils undergoing degradation under the two contrasting scenarios. Employing state-of-the art molecular, biomarker and spectroscopic techniques, the response of the microbial community composition, extracellular enzymes, metatranscriptomes on the different soil environmental conditions and the respective stabilization of OM species in the soils will be investigated. An in-situ 13C labeling experiment will further inform about the microbial utilization and fate of fresh substrate, depending on the environmental condition. Finally, specific incubation experiments will identify the impact of freeze-thaw cycles in OM processing, as well as the role of increasing root exudation in the formation of mineral-organic complexes in the dry scenario and the lignin decomposition potential in the wet scenario.

CRYOVULCAN will thus contribute to the urgently needed knowledge on the effect of the soil hydrological regime on OM stabilization in degraded permafrost soils, which will control the magnitude of greenhouse gases release to the atmosphere in a warmer world.

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Completed projects

Department of Ecosystem Biology

Completed

2022

Jiří Bárta
(GAČR, 2020 - 2022)



Petr Čapek
(GAČR, 2020 - 2022)



Eva Kaštovská
(GAČR, 2020 - 2022)
Karolina Tahovská
(GAČR, 2020 - 2022)
David Boukal
(GAČR, 2020 - 2022)

2021

(GAČR, 2019 - 2021)

(GAČR, 2019 - 2021)


Hana Šantrůčková
(GAČR, 2019 - 2021)


(GAČR, 2019 - 2021)

2020

(GAČR, 2018 - 2020)


(GAČR, 2018 - 2020)

2019

(GAČR, 2017 - 2019)


Hana Šantrůčková
(GAČR, 2017 - 2019)


(GAČR, 2017 - 2019)

2018

(GAČR, 2016 - 2018)

2017

(GAČR, 2013 - 2017)


(GAČR, 2015 - 2017)

POTŘEBA DOPLNIT


2016

(GAČR, 2014 - 2016)

(GAČR, 2014 - 2016)


(GAČR, 2014 - 2016)

Hana Šantrůčková
(GAČR, 2012 - 2016)


(GAČR, 2014 - 2016)

POTŘEBA DOPLNIT





(GAČR, 2013 - 2016)

2015

(OPŽP, 2012 - 2015)

2014

(GAČR, 2011 - 2014)

2011

(GAAV, 2009 - 2011)

Read more …Completed projects

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Running projects

Read more …Running projects

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Water

Department of Ecosystem Biology

Wanted: Postdoc candidate in Quantitative Freshwater Biology for a Junior Group Leader position

Our group, in close cooperation with the Institute of Hydrobiology, BC CAS, studies freshwater lentic ecosystems (e.g. glacial lakes in the Bohemia Forest, manmade reservoirs and fishponds), partly also streams and other interesting freshwaters, ensures specialized undergradute education in Hydrobiology (limnology) in both bachelor and master programs and guarrants the doctoral study programme in Hydrobiology/Limnology

Our research is focused on biotic interactions between aquatic organisms and their interactions with abiotic fcktors, both at a holistic level of entire ecosystem or catchment and under controlled experimental lab (cultivation experiments) or open-air conditions (mesocosms). We provide integration into multidisciplinary teams and joint projects of our Department and the Institute of Hydrobiology that enable training of various approaches and methods, such as current chemical analyses, traditional taxonomy and ecophysiology, molecular analyses, including microbial metagenomics and metatranscriptomics, and ecological modelling.


Our recent projects has been focused, e.g., on problems of eutrophication or acidification of freshwaters in relation to soil processes in the catchment, the role of bacteria and phytoplankton in organic matter and nutrient cycling, on interaction between microorganisms and aquatic macrophytes, or top-down effects of both invertebrate and fish predation on zooplankton structure, population dynamics and ecology of fish in reservoirs and post-mining lakes.

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Soil

Department of Ecosystem Biology

Our group studies carbon, nitrogen and phosphorus biogeochemical cycles in connection with the composition and functioning of soil microbial communities and their relations with plants. We study these interactions in various types of ecosystems such as temperate forests, wetlands (peatlands, swamp forests) and grasslands, but also in more exotic ones such as tundra or taiga. We are mainly interested in learning how natural disturbances and human impacts change the functioning of these ecosystems such as the rates of processes involved in carbon and nutrient transformations and their losses from the system, species and functional diversity of soil microbial community and plant-soil relations.

A major part of our research is in the Bohemian Forest National Park in the south of Czech Republic. We carry on long-term monitoring of the development and restoration of the forest ecosystems (namely soils) in conditions of changing climate and declining acid atmospheric deposition, which caused significant acidification and nitrogen saturation of the soils. The weakened forests are disturbed by bark-beetle outbreaks and wind storms, which further affect the biogeochemial cycles of carbon and nutrients and namely their leaching to surface waters.  Our research is focused on how different forest renovation managements versus natural forestrestoration affect the functioning of the system and its potential for forest renewal. 

In different types of peatlands in the Bohemian Forest, we study the effects of drainage and restoration on carbon stocks, peat quality and the functioning of soil microbial communities namely in connection with greenhouse gas emissions. We also study the effect of vegetation composition on the quality of soluble organic matter, the diversity and functioning of the soil microbial communities and nutrient transformation. 

In alpine meadows in the High Tatras (Slovakia), we study the effects of climate change, namely the increase in temperature, on microbially driven carbon and nutrient transformations in soil, nutrient leaching and the composition of the soil microbial community.  

In addition, members of our group investigate plant-soil interactions in wet grasslands focusing on how plant allocation patterns and rhizosphere functions change across various environmental gradients and how these may be related to particular plant functional traits.

Other projects focused on describing the biogeochemical cycling of carbon, nitrogen and phosphorus in soils from northern tundra, in peatlands in Finland, in permafrost soils in Siberia (Russia), in wetlands in Belize and alpine meadows in several mountain ranges over Europe.

Our work consists of laboratory analyses and incubations of soil and plant samples taken in the field from real ecosystems or mesocosms, but also from field measurements of gas emissions. We combine traditional methods for determining the concentrations of carbon and nutrients in samples (extractions, spectroscopy, analyzers of soluble and solid C and N forms, resin bags), molecular methods for the assessment of microbial community composition and functioning (DNA and RNA extraction, qPCR, sequencing), and methods to measure microbial activity (enzymatic activity, microbial processes, gas production). For more detailed information about nutrient transformations in soils we use isotope labeling (13C and 15N) in the field and in lab experiments. The obtained data are used for interpretations or they further serve as a source for statistical modeling.

We have long-term collaborations with the Biological Centre of the Czech Academy of Sciences, namely with the Institute of Soil Biology and the Hydrobiological Institute, with the Institute of Forest Ecosystem Research (IFER) and with foreign universities in Helsinki, Vienna, Hannover and Uppsala. Such collaborations enable our students to attend research fellowships abroad.

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