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D78 - on the setting of fees for Rigorous Proceedings

Provision of the Dean No. D 78
on the setting of fees for Rigorous Proceedings

as amended on April 26th 2023

According to § 46, Paragraph 5 of the Act No. 111/1998 Coll. On Universities and on Amendments to Other Acts, the fee for accepting an application for a Rigorous Proceedings and related administrative services is set to be:

  • 6000 CZK in case the rigorous examination takes place independently on the candidate’s State Master’s Examination, or the State Doctoral Examination/Defense;
  • 150 CZK in any other cases.

Details for fee payment will be provided to the candidate via IS STAG after the application is registered.

In České Budějovice on April 26th, 2023

Prof. RNDr. František Vácha, Ph.D.
Dean FSc USB

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doc. Mgr. Tomáš Doležal, Ph.D.

doc. Mgr. Tomáš Doležal, Ph.D.

head of the Laboratory of Molecular Integrative Physiology in Drosophila

Faculty of Science, University of South Bohemia
Branišovská 31, 37005 České Budějovice
building B, ground floor, door number 193
 
Email: This email address is being protected from spambots. You need JavaScript enabled to view it.
Tel. +420 387772229
ORCID ID: 0000-0001-5217-4465


doc. Mgr. Tomáš Doležal, Ph.D.

Current possitions

Group leader since 2006

Laboratory of Molecular Integrative Physiology in Drosophila

Member of the Scientific Board since 2023

Faculty of Science, University of South Bohemia, České Budějovice

Chair of the Programme Board since 2021

Integrative biology

Guarantor of the doctoral study programme since 2019

Integrative biology

Guarantor of the master study programme since 2017

Experimental biology - Molecular and Cell Biology and Genetics

Previous possitions

Head of the Department of Molecular Biology and Genetics 2016-2021

Faculty of Science, University of South Bohemia, České Budějovice

Visiting assistant professor 2012-2014

Stanford University School of Medicine, USA

Laboratory of Prof. Peter Bryant 2003-2005

 University of California, Irvine, USA

Laboratory of Dr. Michal Žurovec 2000-2003

Institute of Entomology ASCR, České Budějovice

Laboratory of Prof. Peter Bryant 1999-2000

University of California, Irvine, USA

Laboratory of Molecular Genetics and DNA Diagnosis 1996-1999

1st Medical Faculty, Charles University, Prague

Education

Habilitation (doc.) Molecular and Cell Biology and Genetics 2015

Faculty of Science, University of South Bohemia, České Budějovice

Ph.D., Molecular and Developmental Biology and Genetics 2003

Faculty of Biology, University of South Bohemia, České Budějovice

MSc., Genetics, Molecular Biology and Immunology 1999

Faculty of Science, Charles University, Prague

Awards

Rheos Short Talk Award 2022

2nd Metabolism in Health and Disease Conference 2022, Cancun, Mexico

Prize of the Learned Society of the Czech Republic 2017

in the category of Researcher of the Year 2017 for the validation of the new concept of selfish immunity

cena Barbary Burgess 2004

for excellence in postdoctoral research at University of California, Irvine, USA. Project: Role of ADGF-A gene in Drosophila

International scientific activity

visiting assistant professor 2012-2014

Stanford University School of Medicine, USA (1,5 roku)

postdoctoral fellowship, Prof. Peter Bryant's lab 2003-2005

University of California, Irvine, USA

Research projects (principal investigator)

GAČR 20-09103S 2020-2023

Molekulární mechanismy privilegovaného přístupu aktivovaných imunitních buněk k energii u drozofily

GAČR 17-16406S 2017-2019

Vznik adenozinu jako signálu sobecké imunity

Marie Curie International Outgoing Fellowship 298186 2012 – 2015

Extracellular adenosine role in energetic metabolism during immune response

GAČR P305/12/0115 2012 – 2014

Model drozofily pro studium účinků extracelulárního adenozinu na mechanismy rezistence a tolerance k patogenům

GAČR 204/09/1463 2009 – 2011

Extracelulární adenozin jako stresový hormon v drozofile

GAČR 301/07/0814 2007 – 2010

Zkoumání úlohy kasein kinázy Iepsilon pro vznik rakoviny prsu

GAAV KJB501410602 2006 – 2008

Úlohy extracelulárního adenozinu při krvetvorbě a vrozené imunitě za použití drozofily jako modelu pro studium těchto úloh in vivo 

Scientific projects (hosting lab, mentor)

EMBO Postdoctoral Fellowship 2023-2024

Dr. Ellen McMullen
Immune system vs. Brain: Do metabolic privileges change upon infection?
(ALTF 23-2022)

MŠMT OPVVV, 02-20-079 MSCA IF IV 2021-2023

Dr. Michaela Fencková
The emergence of adenosine as a signal of selfish immunity
(ID CZ.02.2.69/0.0/0.0/20_079/0017633)

Marie Skłodowska-Curie grant 2020-2023

Dr. Michalina Kazek
Trehalose as a source for privileged immunity in Drosophila 
(H2020-WF-01-2018, ID 867430, IMMUNETREH)

Development projects (principal investigator)

FRVŠ 2007

Establishment of a joint laboratory for practical teaching of organic chemistry and molecular biology

Operational Programme Education for Competitiveness (OP VK) 2010-2013

Molecularization of biological disciplines at the Faculty of Science, University of South Bohemia, České Budějovice

Invited lectures

Why is our immune system selfish? 10/11/2017

Kužela seminar, Comenius University in Bratislava

Molecular mechanisms connecting activation of immune cells with metabolic changes at systemic level 22/9/2017

Immunity and Hematopoeisis Workshop, European Drosophila Research Conference 2017, London

Energy privilege of activated immune system 23/2/2017

Lecture for the Czech Immunological Society, Prague

What did we learn from fruit flies about a selfish behavior of immune system? 22/11/2016

Lecture for the Learned Society of the Czech Republic, Prague

Adenosine as a signal of selfsh immune system - fruit fly model 21/5/2016

ESID Eastern Spring School in Primary Immunodeficiencies, Třeboň

Metabolism of privileged immune cells 25/9/2022
Drosophila Blood Cell Biology Symposium, Strasbourg, France

Oral presentations at international conferences

The origin of adenosine as a systemic metabolic regulator in privileged immune cells 5/2022

2nd Metabolism in Health and Disease Conference, Cancun, Mexico

Molecular regulations of metabolism during immune response in Drosophila.  7/2019

T. Dolezal, A. Bajgar, G. Krejcova, P. Nedbalova - Eighth International Symposium on Molecular Insect Science (Elsevier) 7-10 July 2019  Sitges, Spain

Extracellular adenosine regulates complex host-pathogen interactions through the energy release for the immune response 3/2014

T. Dolezal, A. Bajgar, K. Kucerova, L. Jonatova, DS Schneider - 55th Annual Drosophila Research Conference, 26.–30.3. 2014, San Diego, USA

The discs overgrown (dco) mutant - a fly model for the role of Casein Kinase Iε in breast cancer 11/2009

T. Dolezal, J. Matulova, K. Kucerova, E. Kubala, PJ Bryant - 21st European Drosophila Research Conference, Nice, France

Adenosine Deaminase-related Growth Factors (ADGFs) and extracellular adenosine mediate the juvenile hormone response in Drosophila 7/2003

Great Barrier Reef Drosophila Conference, Cairns, Australia

Membership in committees

Member of the Scientific Board since 2023

Faculty of Science, University of South Bohemia, České Budějovice

Member of the Board 2007-2009

Grant agency of University of South Bohemia

Member of the regional committee since 2007

Secondary school vocational activities (SOČ)

Publications

  • Doležal T. (2023) How to eliminate pathogen without killing oneself? Immunometabolism of encapsulation and melanization in Drosophila. Frontiers in Immunology. Dec 6:14:1330312. doi: 10.3389/fimmu.2023.1330312. eCollection 2023.
  • Krejčová G., Morgantini C., Zemanová H., Lauschke V.M., Kovářová J., Kubásek J., Nedbalová P., Kamps-Hughes N., Moos M., Aouadi M., Doležal T. & Bajgar A. (2023) Macrophage-derived insulin antagonist ImpL2 induces lipoprotein mobilization upon bacterial infection. The EMBO Journal. Dec 1;42(23):e114086. doi: 10.15252/embj.2023114086. Epub 2023 Oct 9.
  • Bajgar A,  Krejčová G, Doležal T (2021) Polarization of Macrophages in Insects: Opening Gates for Immuno-Metabolic Research. Front Cell Dev Biol, 15 February 2021 | https://doi.org/10.3389/fcell.2021.629238 (IF=5.2)
  • Doležal TNedbalová P, Krejčová G, Kazek M, Lehr K, Chodáková L, Strych LDolejšková T, Bajgar A (2020) Privileged immune cell upon activation – how it changes its own metabolism and metabolism of the whole organism.  figshare POSTER DOI: 10.6084/m9.figshare.12144831.v1
  • Krejcova G, Danielova A, Nedbalova P, Kazek M, Strych L, Chawla G, Tennessen JM, Lieskovská J, Jindra M, Dolezal T, Bajgar A (2019) Drosophila macrophages switch to aerobic glycolysis to mount effective antibacterial defense. eLife 14;8. pii: e50414. doi: 10.7554/eLife.50414. (IF=7.5)
  • Bajgar A, Salon I, Krejcová G, Dolezal T, Jindra M, Stepanek F (2019) Yeast glucan particles enable intracellular protein delivery in Drosophila without compromising the immune system. Biomater Sci 30. doi: 10.1039/c9bm00539k. (IF=5.2)
  • Dolezal T, Krejcova G, Bajgar A, Nedbalova P, Strasser P (2019) Molecular regulations of metabolism during immune response in insects. Insect Biochem Mol Biol 109:31-42. doi: 10.1016/j.ibmb.2019.04.005. (IF=3.9)
  • Bajgar A, Dolezal T (2018) Extracellular adenosine modulates host-pathogen interactions through regulation of systemic metabolism during immune response in Drosophila. PLoS Pathog 14(4): e1007022 (IF=6.6)
  • Dolezal T (2015) - Adenosine: a selfish-immunity signal? Oncotarget - Immunology and Microbiology Section 6 (32), 32307-32308 (IF=6.3)
  • Bajgar A, Kucerova K, Jonatova L, Tomcala A, Schneedorferova I, Okrouhlik J, Dolezal T (2015) Extracellular Adenosine Mediates a Systemic Metabolic Switch during Immune Response. PLoS Biol 13(4): e1002135 (IF=11.8)
  • Novakova M and Dolezal T (2011). Expression of Drosophila adenosine deaminase in immune cells during inflammatory response. PLoS ONE 6(3): e17741 (IF=3.2)
  • Fenckova M, Hobizalova R, Fric Z, Dolezal T (2011). Functional characterization of ecto-5’-nucleotidases and apyrases in Drosophila melanogaster. Insect Biochem Mol Biol 41(12): 956-967 (IF=3.4)
  • Zuberova M, Fenckova M, Simek P, Janeckova L, Dolezal T (2010). Increased extracellular adenosine in adenosine deaminase deficient flies activates a release of energy stores leading to wasting and death. Dis Model Mech 3(11-12): 773-84 (IF=4.9)
  • Dolezal T, Kucerova K, Neuhold J, Bryant PJ (2010). Casein kinase I epsilon somatic mutations found in breast cancer cause overgrowth in Drosophila. Int J Dev Biol 54: 1419 – 1424 (IF=2.8)
  • Foldynova-Trantirkova S, Sekyrova P, Tmejova K, Brumovska E, Bernatik O, Blankenfeldt W, Krejci P, Kozubik A, Dolezal T, Trantirek L, Bryja V. (2010). Breast cancer specific mutations in CK1epsilon inhibit Wnt/beta-catenin and activate Wnt/Rac1/JNK and NFAT pathways to decrease cell adhesion and promote cell migration. Breast Cancer Res 12(3): R30 (IF=5.5)
  • Dolezal T, Dolezelova E, Zurovec M, Bryant PJ (2005). A Role for Adenosine Deaminase in Drosophila Larval Development. PLoS Biol 3(7): e201 (IF=11.8)
  • Dolezelova E, Zurovec M, Dolezal T, Simek P, Bryant, PJ (2005). The emerging role of adenosine deaminases in insects. Insect Biochem Mol Biol 35(5): 381-9 (IF=2.8)
  • Dolezal T, Gazi M, Zurovec M, Bryant PJ (2003). Genetic analysis of the ADGF multigene family by homologous recombination and gene conversion in Drosophila. Genetics 165: 653-666 (IF=4.3)
  • Zurovec M, Dolezal T, Gazi M, Pavlova E, Bryant PJ (2002). Adenosine deaminase-related growth factors stimulate cell proliferation in Drosophila by depleting extracellular adenosine. PNAS 99(7): 4403-4408 (IF=10.9)

Teaching activities at the University of South Bohemia

Teaching of courses:
Fundamentals of Cell Biology (KMB/023) – guarantor and lecturer

Cellular and Molecular Biology and Genetics I (KMB/758) - guarantor and lecturer

Advanced methods in Molecular Biology (KMB/603) - guarantor and lecturer

2006-2016 guarantor and lecturer (100%) of “Foundation of modern biology” (undergraduate course)
2007-2010 guarantor and lecturer (100%) of “Molecular biology and Genetics” (undergraduate course in English for international program Biological Chemistry)
2008-2009 guarantor and lecturer (20%) of “Cell regulation and signaling” (graduate course in English)
2010-2012 guarantor and lecturer (100%) of “Basic methods in molecular biology” (undergraduate course)
since 2014 lecturer (50%) of “Developmental biology” (undergraduate course)
since 2017 guarantor and lecturer (100%) of "Introduction to Cell Biology" - mandatory course for Czech undergraduate Biology programme and undergraduate course in English for international program Biological Chemistry
since 2017 guarantor of "Methods in Molecular Biology" (undergraduate course in English for international program Biological Chemistry)

Supervision of students and postdocs

2 Postdocs / 4 Ph.D. students / 4 Master Students / 19 Bachelor Students

Ph.D. theses:
Milena Novakova, 2011 - "Regulation of extracellular adenosine level by ADGF-A in Drosophila melanogaster"
Michaela Fenckova, 2012 - "Role of extracellular adenosine in Drosophila"
Monika Zuberova, 2012 - "The role of adenosine signaling pathway in regulation of metabolic reserves"

Master degree theses:
Tomas Gregor, 2015 - "Tissue specific mutagenesis with TAL nucleases using Drosophila melanogaster as a model" (in Czech)
Lucie Jonatova, 2013 - "The Role of Dco in Drosophila Haematopoiesis”
Jana Matulova (Neuhold), 2009 - "Study of the Role of Casein Kinase I epsilon in BreastCancer Using Drosophila as a Model"

Supervised Bachelor students:
David Opavsky, Jana Kadlecova, Tomas Krucek, Radka Hobizalova, Eugen Kubala, David Hartmann, Sarka Pospisilova, Tamara Aigner, Bianca Spitzbart, Marek Renner, Kristina Preur, Tomas Gregor, Jiri Stros, Paul Strasser, Klara Kopicova, Thomas Stehrer, Barbara Jetzinger, Lukas Strych, Katharina Lehr

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At the fringe of the neolithization: strategies of the first farmers of South Bohemia

Principle investigator: Václav Vondrovský (Institute of Archaeology CAS)
Co-investigator from the department: Michaela Ptáková
Funding provider: Czech Science Foundation
Grant No.: 21-16614S
Duration: 2021- 2023

Peripheral zones of Neolithic occupation in Central Europe have remained out of the scope of modern archaeological research. This project is therefore focused on a specific region of South Bohemia which was colonised by a secondary wave of Linear Pottery culture and it was occupied only sporadically in the later Neolithic periods. We will study the dynamics of occupation in the region, interregional contacts, possible contacts with hunter-gatherer groups, subsistence strategies of local farmers and their interactions with the regional environment. In comparison with conventionally studied core regions of the Elbe, Danube, and Morava rivers, we strive for understanding of the Neolithic cultural habitus in more detail. This could reach its limits in peripheral zones and be subject to adaptations and considerable diversity of practice. To follow this objective, we need to enlarge current data using standard archaeological methods and multiproxy environmental approaches, such as analyses of plant macroremains, phytoliths, anthracological assemblages, and the pollen record.

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ARCHAEOPLANT - research of plant identification using artificial intelligence

Principle investigator: Jaromír Beneš
Funding provider: Interreg, European Commission
Grant No.: Cil - Ziel Interreg 343
Duration: 2021- 2023

The purpose and goal of the project are to strengthen basic research in the field of botany, ethnobotany and archaeobotany. The project aims to develop an innovative methodological procedure and scientific tool that will enable the study of current and past vegetation of the Czech-Bavarian area by means of artificial intelligence. The basis will be the development of comparative methods of plant parts that carry specific information. The project will create a digital plant macro- and microhabitats database, emphasising FAIR data principles. In the next phase, a module capable of semi-automatically identifying plant seeds will be developed for about 50 plant taxa and a pilot series of plant phytoliths and starches. The resulting methodology will serve as a tool for reconstructing past natural environments and studying human-nature interactions in the Czech-Bavarian area from prehistory to the present. The partner of the project is the University of Regensburg.

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